Hg_chrom5_TN10mRNA_9624
Organism: Heterodera glycines Gene Locus: chr5:3927985-3928907 Feature type: polypeptideProtein Sequence
Length: 177
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 1.051 | 0.719 | 1.753 | 1.507 | 1.014 | 0.605 | 0.847 | 2.511 | 1.145 | 0.77 | 0.332 | 0.471 | 0.761 | 1.845 | 1.049 | 0.834 | 0.599 | 0.435 | 0.499 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9054
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — |
70-91
|
0.789
|
— | — |
0.000
|
— | — |
0.338
|
0.561
|
0.045
|
0.230
|
0.760
|
0.170
|
0.443
|
0.062
|
0.239
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009360
|
1.000
|
1.000
|
Hsc_gene_20076.t1
|
Hsc_gene_20076.t1
|
— | — |
KAF7630963.1 RING-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.858|GO:0005575_0.847|GO:0110165_0.844|GO:0005622_0.726|GO:0009987_0.694|GO:0065007_0.647|GO:0050789_0.638|GO:0003674_0.581|GO:0016020_0.571|GO:0043226_0.519|GO:0050896_0.514|GO:0005737_0.506
|
IPR001841+29-79_29-80+|IPR013083+4-151+
|
SM00184+29-79+
|
PF13923+29-56+Zinc_finger,_C3HC4_type_(RING_finger)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-177
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
19824.790
|
7.789
|
3.500
|
28.814
|
5.650
|
49.718
|
50.282
|
15.819
|
12.994
|
46.893
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
598.596
|
794.934
|
385.395
|
395.489
|
451.395
|
427.481
|
498.713
|
466.955
|
414.531
|
1025.323
|
763.555
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.275
|
-1.144
|
— |
0.159
|
— |
0.234
|
— | — | — | — | — | — | — |
No JSON data available for plots.