Hg_chrom5_TN10mRNA_9626
Organism: Heterodera glycines Gene Locus: chr5:3929998-3935235 Feature type: polypeptideProtein Sequence
Length: 717
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.843 | 0.876 | 1.04 | 0.337 | 0.628 | 2.074 | 0.93 | 2.162 | 0.682 | 1.187 | 0.571 | 1.887 | 1.201 | 1.395 | 1.338 | 0.917 | 0.869 | 0.866 | 2.038 | 0.369 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9056
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.640
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.771
|
0.089
|
0.014
|
0.420
|
0.103
|
0.034
|
0.031
|
0.017
|
0.072
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009362
|
1.000
|
1.000
|
Hsc_gene_20078.t1
|
Hsc_gene_20078.t1
|
— |
U4PCM1.2 pre-mRNA 3' end processing protein pfs-2 [Caenorhabditis elegans]
|
KAI1720392.1 WD domain, g-beta repeat domain-containing protein [Ditylenchus destructor]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0031124
|
GO:0005575_0.905|GO:0110165_0.904|GO:0016020_0.830|GO:0005622_0.800|GO:0043226_0.762|GO:0043229_0.753|GO:0043227_0.742|GO:0043231_0.719|GO:0005634_0.607
|
IPR001680+169-208_181-208_211-250_216-249_218-250_252-292_255-292_260-292_295-336_300-328_302-345_339-378_340-378_346-387_399-440_443-483_451-482_452-482+|IPR015943+162-254_255-406_413-495+|IPR036322+163-482+|IPR045245+98-401+
|
SM00320+169-208_211-250_252-292_295-336_339-378_399-440_443-483+
|
PF00400+181-208_216-249_255-292_300-328_340-378_452-482+WD_domain,_G-beta_repeat
|
— |
PTHR22836+98-401+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-100;498-717
|
1.000
|
101-497
|
9oxs_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
80568.200
|
8.770
|
21.500
|
24.128
|
12.552
|
47.699
|
52.301
|
14.644
|
9.484
|
50.209
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
steelblue
|
1646.913
|
2262.981
|
2017.751
|
1342.751
|
1378.546
|
1553.577
|
2666.798
|
2158.593
|
1096.038
|
1365.341
|
1249.925
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.396
|
-0.890
|
-0.478
|
— |
0.187
|
0.790
|
0.369
|
0.449
|
— | — | — | — | — |
No JSON data available for plots.