Hg_chrom5_TN10mRNA_9627
Organism: Heterodera glycines Gene Locus: chr5:3936200-3938468 Feature type: polypeptideProtein Sequence
Length: 383
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.516 | 1.639 | 1.187 | 0.54 | 0.87 | 0.87 | 0.808 | 1.436 | 1.276 | 1.552 | 0.633 | 1.075 | 2.031 | 0.854 | 1.332 | 1.119 | 0.428 | 0.91 | 1.607 | 0.614 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9057
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KRKR
|
20-51
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.095
|
0.081
|
0.004
|
0.152
|
0.376
|
0.131
|
0.855
|
0.006
|
0.098
|
0.309
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004069
|
1.000
|
2.000
|
Hsc_gene_20079.t1;Hsc_gene_20079.t2
|
Hsc_gene_20079.t1
|
— |
P15535.1 Beta-1,4-galactosyltransferase 1 [Mus musculus]
|
KAI1718376.1 beta-1,4-N-acetylgalactosaminyltransferase bre-4 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0016757
|
GO:0008150_0.905|GO:0009987_0.747|GO:0008152_0.724|GO:0003674_0.693|GO:0005575_0.681|GO:0110165_0.681|GO:0009058_0.634|GO:0044237_0.634|GO:0044238_0.619|GO:0044249_0.608|GO:0003824_0.598|GO:0016020_0.577|GO:1901135_0.576|GO:1901137_0.556|GO:0005622_0.530|GO:0016740_0.524|GO:0005737_0.509
|
IPR003859+33-380_190-209_221-240_260-281_282-300+|IPR027791+247-323+|IPR027995+121-241+|IPR029044+93-378_135-376+
|
— |
PF02709+247-323+N-terminal_domain_of_galactosyltransferase|PF13733+121-241+N-terminal_region_of_glycosyl_transferase_group_7
|
— |
PTHR19300+33-380+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-383
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
43855.950
|
6.717
|
1.500
|
25.326
|
14.360
|
46.214
|
53.786
|
13.577
|
11.749
|
47.258
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkgrey
|
1580.652
|
1479.590
|
883.604
|
839.511
|
1065.904
|
1339.405
|
1749.658
|
1254.589
|
679.589
|
3176.064
|
2106.146
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.975
|
-0.955
|
— |
0.312
|
0.344
|
0.396
|
— |
0.622
|
-2.323
|
— | — | — | — |
No JSON data available for plots.