Hg_chrom5_TN10mRNA_9630

Organism: Heterodera glycines    Gene Locus: chr5:3946670-3949035    Feature type: polypeptide

Protein Sequence

Length: 429
FASTA 



  
  

    

      
        

          COMPOSITION
          
            Ala
          
            Asn
          
            Asp
          
            Cys
          
            Glu
          
            Gln
          
            Gly
          
            His
          
            Ile
          
            Leu
          
            Lys
          
            Met
          
            Phe
          
            Pro
          
            Arg
          
            Ser
          
            Thr
          
            Val
          
            Trp
          
            Tyr
          
            Xaa
          
        

      
      
        
ABUNDANCE
          
            
            
              0.894
              
            
            
          
            
            
              0.542
              
            
            
          
            
            
              1.356
              
            
            
          
            
            
              0.804
              
            
            
          
            
            
              0.894
              
            
            
          
            
            
              0.717
              
            
            
          
            
            
              0.666
              
            
            
          
            
            
              1.865
              
            
            
          
            
            
              0.881
              
            
            
          
            
            
              1.134
              
            
            
          
            
            
              0.671
              
            
            
          
            
            
              1.371
              
            
            
          
            
            
              1.36
              
            
            
          
            
            
              1.166
              
            
            
          
            
            
              1.284
              
            
            
          
            
            
              1.166
              
            
            
          
            
            
              1.223
              
            
            
          
            
            
              1.024
              
            
            
          
            
            
              0.897
              
            
            
          
            
            
              0.823
              
            
            
          
            
            
              0.0
              
            
            
          
        

      
    

  

  







  
No JSON data available for plots.



















Features


   TSV







    

      
        

            GENOMICS
          
            Gene Name
          
            Nested Gene
          
            (host gene)
          
            Average
          
            TN7
          
            TN8
          
            TN10
          
            TN20
          
            TN22
          
            MM26
          
            OP50
          
            PA3
          
            X12
          
        

      
      
        

          
            
              
Hg_chrom5_TN10gene_9060

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
        

      
    

  




    

      
        

            EFFECTORS
          
            SCN putative
          
            SCN known (N)
          
            SCN known (P)
          
            BCN known
          
            BCN putative
          
            Effector Islands
          
            Cluster Name
          
            (score)
          
        

      
      
        

          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
14-Not_described

            		
          
            
              
1.000

            		
          
        

      
    

  




    

      
        

            SECRETION
          
            Secretion
          
            DL-signals
          
            DL-localization
          
            Localizer
          
            L-nucleus
          
            L-mitochondria
          
            (score)
          
            L-chloroplast
          
            (score)
          
            Signal Peptide
          
            (score_v5)
          
            (score_v6)
          
            (TM_v5)
          
            (TM_v6)
          
            nucleus
          
            mitochondrion
          
            plastid
          
            cytoplasm
          
            endoplasmic_reticulum
          
            lysosome_vacuole
          
            golgi_apparatus
          
            peroxisome
          
            peroxisome
          
            extracellular
          
        

      
      
        

          
            
              
not_secreted

            		
          
            
              
nuclear_export_signal

            		
          
            
              
nucleus

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
0.000

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
0.559

            		
          
            
              
0.093

            		
          
            
              
0.010

            		
          
            
              
0.452

            		
          
            
              
0.190

            		
          
            
              
0.271

            		
          
            
              
0.303

            		
          
            
              
0.010

            		
          
            
              
0.104

            		
          
            
              
0.021

            		
          
        

      
    

  




    

      
        

            HOMOLOGY
          
            Orthogroup
          
            (SCN counts)
          
            (BCN counts)
          
            (BCN genes)
          
            BCN hits
          
            C. elegans hits
          
            SP best hit
          
            NR best hit
          
            HGT Donor
          
            HGT Index
          
        

      
      
        

          
            
              
OG0004070

            		
          
            
              
2.000

            		
          
            
              
1.000

            		
          
            
              
Hsc_gene_20082.t1

            		
          
            
              
Hsc_gene_20082.t1

            		
          
            
              
                —
              
            
          
            
              
Q05048.1 Cleavage stimulation factor subunit 1 [Homo sapiens]

            		
          
            
              
XP_003138618.1 cleavage stimulation factor [Loa loa];EFO25450.1 cleavage stimulation factor [Loa loa]

            		
          
            
              
No

            		
          
            
              
0.000

            		
          
        

      
    

  




    

      
        

            FUNCTIONAL
          
            TF
          
            GO terms
          
            DeepGoPlus
          
            InterPro
          
            SMART
          
            Pfam
          
            FunFam
          
            Panther
          
        

      
      
        

          
            
              
                —
              
            
          
            
              
GO:0005515|GO:0005848|GO:0031124

            		
          
            
              
GO:0005575_0.801|GO:0110165_0.789|GO:0008150_0.701|GO:0005622_0.648|GO:0003674_0.640|GO:0016020_0.604|GO:0009987_0.532|GO:0043226_0.530|GO:0005488_0.501

            		
          
            
              
IPR001680+97-136_104-134_104-138_156-195_160-195_163-204_201-239_213-238_243-284_252-293_254-284_287-328_289-327_379-419_387-418_389-418+|IPR015943+84-343_344-424+|IPR032028+5-59+|IPR036322+97-418+|IPR038184+1-59+|IPR044633+4-422+

            		
          
            
              
SM00320+97-136_156-195_201-239_243-284_287-328_379-419+

            		
          
            
              
PF00400+104-134_160-195_213-238_254-284_289-327_389-418+WD_domain,_G-beta_repeat|PF16699+5-59+Cleavage_stimulation_factor_subunit_1,_dimerisation_domain

            		
          
            
              
G3DSA:1.20.960.50:FF:000001+1-58+Cleavage_stimulation_factor_subunit_1|G3DSA:2.130.10.10:FF:000089+252-424+Cleavage_stimulation_factor_subunit_1

            		
          
            
              
PTHR44133+4-422+

            		
          
        

      
    

  




    

      
        

            SEQUENCE
          
            Protein Sequence
          
        

      
      
        

          
            
              
                —
              
            
          
        

      
    

  




    

      
        

            STRUCTURE
          
            Disorder
          
            (regions)
          
            Ordered
          
            (regions)
          
            PDB
          
            (hit type)
          
        

      
      
        

          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
1.000

            		
          
            
              
1-429

            		
          
            
              
6b3x_A

            		
          
            
              
STRUCT_HOMOLOG

            		
          
        

      
    

  




    

      
        

            BIOPHYSICS
          
            Inclusion Body
          
            Mol weight
          
            pI
          
            Net Charge
          
            Charged
          
            Aromatic
          
            Polar
          
            Non-polar
          
            Basic
          
            Acidic
          
            Small
          
        

      
      
        

          
            
              
0.547

            		
          
            
              
47914.220

            		
          
            
              
6.398

            		
          
            
              
-1.000

            		
          
            
              
27.273

            		
          
            
              
12.587

            		
          
            
              
48.019

            		
          
            
              
51.981

            		
          
            
              
14.452

            		
          
            
              
12.821

            		
          
            
              
53.846

            		
          
        

      
    

  




    

      
        

            EXPRESSION
          
            Bin13
          
            Bin38
          
            Average
          
            Egg
          
            ppJ2
          
            pJ2
          
            J3
          
            J4
          
            Female
          
            Male
          
            Gland (J2)
          
            Gland (J3)
          
            Gland (J2+J3)
          
        

      
      
        

          
            
              
skyblue

            		
          
            
              
grey

            		
          
            
              
1936.120

            		
          
            
              
1355.340

            		
          
            
              
965.225

            		
          
            
              
1163.603

            		
          
            
              
1233.614

            		
          
            
              
1049.543

            		
          
            
              
1389.293

            		
          
            
              
932.804

            		
          
            
              
384.324

            		
          
            
              
5148.749

            		
          
            
              
3106.852

            		
          
        

      
    

  




    

      
        

            DGE
          
            Egg vs ppJ2
          
            Egg vs pJ2
          
            ppJ2 vs pJ2
          
            pJ2 vs J3
          
            J3 vs J4
          
            J4 vs F
          
            J4 vs M
          
            F vs M
          
            G(J3 vs J2)
          
            G(J2) vs pJ2
          
            G(J3) vs J3
          
            G(J2) lines
          
            G(J3) lines
          
        

      
      
        

          
            
              
-0.720

            		
          
            
              
-0.357

            		
          
            
              
0.379

            		
          
            
              
                —
              
            
          
            
              
-0.219

            		
          
            
              
0.415

            		
          
            
              
-0.274

            		
          
            
              
0.717

            		
          
            
              
-3.840

            		
          
            
              
                —
              
            
          
            
              
-1.771

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
        

      
    

  











  
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