Hg_chrom5_TN10mRNA_9631
Organism: Heterodera glycines Gene Locus: chr5:3950682-3952866 Feature type: polypeptideProtein Sequence
Length: 336
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 0.9 | 0.595 | 0.103 | 1.042 | 0.916 | 2.268 | 1.339 | 0.86 | 0.804 | 0.767 | 1.05 | 1.157 | 1.488 | 1.093 | 1.233 | 0.585 | 0.722 | 0.229 | 0.788 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9061
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.874
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RGGRGGSGPPGGRGGMANRGGFGSGRGRGTPGGSRGGGSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.790
|
0.128
|
0.017
|
0.460
|
0.232
|
0.041
|
0.055
|
0.003
|
0.067
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009364
|
1.000
|
1.000
|
Hsc_gene_20083.t1
|
Hsc_gene_20083.t1
|
— |
Q9WU01.1 KH domain-containing, RNA-binding, signal transduction-associated protein 2 [Mus musculus]
|
KAF7634620.1 KH domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.821|GO:0005575_0.783|GO:0110165_0.780|GO:0003674_0.714|GO:0009987_0.713|GO:0005622_0.688|GO:0005488_0.673|GO:0043226_0.656|GO:0043229_0.653|GO:0016020_0.635|GO:0003676_0.598|GO:0003723_0.598|GO:0097159_0.598|GO:0043227_0.583|GO:0065007_0.577|GO:0008152_0.562|GO:0043231_0.556|GO:0044238_0.555|GO:0050789_0.555|GO:0009058_0.547|GO:0044237_0.536|GO:0009059_0.529|GO:0010467_0.529|GO:0043170_0.529|GO:0044249_0.529|GO:0006139_0.505
|
IPR004087+115-213+|IPR004088+132-179+|IPR036612+58-228_117-222+|IPR045071+76-223+
|
SM00322+115-213+
|
PF00013+132-179+KH_domain
|
G3DSA:3.30.1370.10:FF:000105+58-231+Protein_CBG12765
|
PTHR11208+76-223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
216-336
|
1.000
|
1-215
|
5elt_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.978
|
34787.660
|
9.130
|
7.500
|
22.619
|
9.821
|
42.262
|
57.738
|
13.095
|
9.524
|
58.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
2112.189
|
2019.927
|
2724.539
|
2870.628
|
2701.191
|
2218.073
|
2300.750
|
1648.081
|
1766.130
|
1735.033
|
1748.360
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.202
|
0.370
|
0.185
|
-0.120
|
-0.270
|
— |
-0.533
|
0.623
|
— | — | — | — | — |
No JSON data available for plots.