Hg_chrom5_TN10mRNA_9632
Organism: Heterodera glycines Gene Locus: chr5:3958652-3960942 Feature type: polypeptideProtein Sequence
Length: 383
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.698 | 1.154 | 0.712 | 1.08 | 0.696 | 0.669 | 0.622 | 1.697 | 1.102 | 1.482 | 0.554 | 0.461 | 1.16 | 0.954 | 1.066 | 1.79 | 1.284 | 0.87 | 2.008 | 0.922 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9062
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
cell_membrane
|
— | — | — | — | — | — |
1-22
|
0.993
|
1.000
|
1.000
|
1.000
|
0.094
|
0.097
|
0.003
|
0.414
|
0.301
|
0.428
|
0.380
|
0.105
|
0.612
|
0.269
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_20084.t1
|
— |
P21709.4 Ephrin type-A receptor 1 [Homo sapiens]
|
KAI1718453.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.957|GO:0009987_0.860|GO:0005575_0.791|GO:0110165_0.791|GO:0065007_0.748|GO:0050789_0.732|GO:0050794_0.712|GO:0032501_0.683|GO:0050896_0.676|GO:0003674_0.672|GO:0032502_0.662|GO:0048856_0.662|GO:0016020_0.640|GO:0071944_0.636|GO:0051716_0.616|GO:0007154_0.600|GO:0023052_0.595|GO:0005886_0.591|GO:0007165_0.577|GO:0007275_0.569|GO:0005622_0.567|GO:0048731_0.531|GO:0007166_0.527|GO:0030154_0.503|GO:0048869_0.503
|
IPR001090+24-208_24-213_26-208+|IPR008979+25-206+|IPR050449+8-308+
|
SM00615+24-208+
|
PF01404+26-208+Ephrin_receptor_ligand_binding_domain
|
— |
PTHR46877+8-308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-383
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
42684.420
|
7.945
|
9.500
|
20.366
|
13.316
|
48.303
|
51.697
|
12.272
|
8.094
|
54.308
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
194.583
|
329.464
|
190.861
|
175.899
|
293.598
|
243.586
|
860.311
|
117.838
|
26.385
|
2.179
|
12.553
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.017
|
-1.042
|
— |
0.709
|
— |
1.830
|
-1.154
|
3.010
|
— | — |
6.836
|
— | — |