SCN Proteipedia

Hg_chrom5_TN10mRNA_9634

Organism: Heterodera glycines Gene Locus: chr5:3963100-3965738 Feature type: polypeptide

Protein Sequence

Length: 578

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.744	1.086	1.007	1.074	0.865	1.153	1.174	1.557	1.077	1.075	0.629	1.73	0.961	0.998	1.236	0.989	0.879	0.891	1.198	0.967	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9063	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane\|lysosome_vacuole	—	KRLYEMMLACWQAERHKRP	—	—	—	—	—	—	0.000	—	—	0.129	0.051	0.012	0.241	0.248	0.623	0.425	0.128	0.784	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004071	2.000	1.000	Hsc_gene_20084.t1	Hsc_gene_20084.t1	—	O61460.1 Ephrin receptor 1 [Caenorhabditis elegans]	KAI1718453.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004713\|GO:0005524\|GO:0006468	GO:0008150_0.980\|GO:0009987_0.880\|GO:0065007_0.807\|GO:0050789_0.797\|GO:0050794_0.774\|GO:0032501_0.768\|GO:0050896_0.761\|GO:0003674_0.751\|GO:0032502_0.747\|GO:0005575_0.742\|GO:0048856_0.739\|GO:0110165_0.739\|GO:0051716_0.717\|GO:0023052_0.705\|GO:0007154_0.703\|GO:0003824_0.699\|GO:0016740_0.693\|GO:0140096_0.693\|GO:0007165_0.692\|GO:0007275_0.662\|GO:0016772_0.642\|GO:0016773_0.624\|GO:0016301_0.617\|GO:0048731_0.615\|GO:0004672_0.614\|GO:0007166_0.611\|GO:0071944_0.596\|GO:0005886_0.554\|GO:0016020_0.554\|GO:0030154_0.547\|GO:0048869_0.547\|GO:0007167_0.533\|GO:0007169_0.513\|GO:0008152_0.505	IPR000719+287-568+\|IPR001245+287-564_369-382_471-481_490-512_535-557+\|IPR008266+413-425+\|IPR011009+261-564+\|IPR017441+293-323+\|IPR020635+287-564+\|IPR050449+23-88+	SM00219+287-564+	PF07714+287-564+Protein_tyrosine_and_serine/threonine_kinase	G3DSA:1.10.510.10:FF:000268+373-577+Receptor_protein-tyrosine_kinase\|G3DSA:2.10.50.10:FF:000001+16-77+Ephrin_type-A_receptor_5\|G3DSA:3.30.200.20:FF:000802+261-371+Ephrin_receptor_1	PTHR46877+23-88+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-37	1.000	38-578	2qoq_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.796	63961.430	7.062	6.000	24.048	11.419	45.502	54.498	13.322	10.727	52.941

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	715.573	1155.449	598.420	516.893	737.655	606.835	2108.562	412.839	35.529	802.743	473.937

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.179	-1.298	—	0.482	-0.268	1.808	-0.663	2.496	-4.640	—	—	—	—

No JSON data available for plots.

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