Hg_chrom5_TN10mRNA_9636
Organism: Heterodera glycines Gene Locus: chr5:3970373-3971003 Feature type: polypeptideProtein Sequence
Length: 158
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.883 | 1.913 | 0.345 | 1.746 | 1.477 | 0.974 | 0.527 | 0.949 | 2.25 | 1.112 | 0.479 | 1.117 | 1.406 | 0.73 | 1.55 | 0.904 | 0.519 | 0.959 | 0.487 | 0.558 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9065
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
REMKRRF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.475
|
0.489
|
0.074
|
0.269
|
0.706
|
0.213
|
0.429
|
0.029
|
0.109
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009366
|
1.000
|
1.000
|
Hsc_gene_20086.t1
|
Hsc_gene_20086.t1
|
— | — |
KAI6214199.1 Tripartite motif-containing protein 65 isoform X4 [Aphelenchoides besseyi]
|
No
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.921|GO:0110165_0.919|GO:0005622_0.814|GO:0005737_0.774|GO:0016020_0.607|GO:0008150_0.599|GO:0009987_0.552|GO:0043226_0.535|GO:0071944_0.517|GO:0043229_0.513|GO:0005886_0.508|GO:0003674_0.494|GO:0043227_0.486|GO:0065007_0.484|GO:0043231_0.480|GO:0050789_0.467|GO:0050896_0.456|GO:0050794_0.452|GO:0005488_0.433|GO:0051716_0.425|GO:0008152_0.418|GO:0009058_0.404|GO:0044237_0.404|GO:0005515_0.403|GO:0023052_0.402|GO:0044238_0.402|GO:0005773_0.401|GO:0032502_0.401|GO:0048856_0.401|GO:0007154_0.400|GO:0042221_0.398|GO:0043170_0.397|GO:0006950_0.394|GO:0044249_0.393|GO:0048518_0.390|GO:0007165_0.389|GO:0009059_0.388|GO:0048522_0.383|GO:0019538_0.381|GO:0048519_0.381|GO:0010467_0.378|GO:0019222_0.378|GO:0006139_0.375|GO:0012505_0.374|GO:0031323_0.374|GO:0060255_0.371|GO:0010646_0.369|GO:0023051_0.368|GO:0048583_0.368|GO:0080090_0.368|GO:0009605_0.366|GO:0044419_0.366|GO:0034654_0.365|GO:1901135_0.365|GO:0003824_0.364|GO:0009607_0.364|GO:0009889_0.364|GO:0033554_0.364|GO:0043207_0.364|GO:0051707_0.364|GO:0010556_0.363|GO:0031326_0.363|GO:0009966_0.362|GO:0090304_0.362|GO:0002376_0.361|GO:0009893_0.361|GO:0141187_0.361|GO:0010468_0.360|GO:0006952_0.359|GO:0009056_0.359|GO:0016070_0.359|GO:0031325_0.359|GO:1901698_0.359|GO:0010604_0.358|GO:0032774_0.358|GO:0035556_0.358|GO:0043412_0.358|GO:0065009_0.358|GO:0009653_0.357|GO:0009891_0.357|GO:0010647_0.357|GO:0031328_0.357|GO:0036211_0.357|GO:0098542_0.357|GO:1902531_0.357|GO:0023056_0.356|GO:0010557_0.355|GO:0048584_0.355|GO:0009057_0.354|GO:0031090_0.354|GO:0141124_0.354|GO:0006351_0.353|GO:0016787_0.353|GO:0019219_0.353|GO:0044248_0.353|GO:0097159_0.353|GO:0006355_0.352|GO:0006508_0.352|GO:0006955_0.352|GO:0009100_0.352|GO:0009967_0.352|GO:0051252_0.352|GO:2001141_0.352|GO:0009894_0.351|GO:0016740_0.351|GO:0030163_0.351|GO:0045087_0.351|GO:0140546_0.351
|
IPR001841+14-67_14-68+|IPR013083+2-131+|IPR027370+14-65+|IPR051435+9-87+
|
SM00184+14-67+
|
PF13445+14-65+RING-type_zinc-finger
|
— |
PTHR22791+9-87+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-158
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
17905.680
|
7.110
|
1.500
|
23.418
|
9.494
|
44.937
|
55.063
|
12.658
|
10.759
|
46.835
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
182.033
|
29.427
|
39.652
|
77.364
|
292.582
|
340.708
|
185.755
|
166.897
|
26.814
|
351.640
|
212.429
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.256
|
1.075
|
1.888
|
— |
-0.865
|
-1.138
|
— | — | — | — | — | — |
No JSON data available for plots.