Hg_chrom5_TN10mRNA_9638
Organism: Heterodera glycines Gene Locus: chr5:3971788-3976629 Feature type: polypeptideProtein Sequence
Length: 1,067
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.806 | 0.48 | 0.409 | 0.808 | 1.14 | 1.202 | 0.58 | 1.265 | 0.875 | 1.254 | 1.15 | 1.323 | 0.989 | 1.514 | 1.989 | 1.486 | 1.137 | 0.71 | 0.577 | 0.138 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9067
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
KKPR,KRIR,KPRKR,KRRRKMMKVLFKKK.,RAKRRRKMMKVLFKKK,RKKSLRLSNLSARPKKVFR
|
— | — |
17-57
|
0.999
|
1-25
|
0.903
|
0.999
|
0.000
|
0.000
|
0.306
|
0.119
|
0.006
|
0.343
|
0.084
|
0.065
|
0.238
|
0.089
|
0.135
|
0.367
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009367
|
1.000
|
1.000
|
Hsc_gene_20087.t1
|
Hsc_gene_20087.t1
|
— | — |
KAI1718403.1 acetyltransferase (GNAT) family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
182-316;552-849;1066-1067
|
3.000
|
1-181;317-551;850-1065
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
119520.090
|
11.092
|
101.500
|
28.960
|
7.310
|
53.046
|
46.954
|
19.869
|
9.091
|
48.360
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
342.422
|
181.038
|
316.575
|
162.798
|
156.578
|
198.796
|
321.160
|
297.529
|
81.143
|
824.311
|
505.810
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
-0.291
|
-0.849
|
— |
0.359
|
0.703
|
0.474
|
— | — | — | — | — | — |