Hg_chrom5_TN10mRNA_9640
Organism: Heterodera glycines Gene Locus: chr5:3985626-3986881 Feature type: polypeptideProtein Sequence
Length: 189
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.492 | 0.984 | 1.443 | 0.0 | 1.411 | 1.357 | 0.756 | 1.323 | 1.529 | 1.144 | 1.443 | 1.867 | 0.735 | 0.814 | 1.62 | 0.907 | 0.867 | 0.401 | 0.814 | 0.778 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9069
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.939
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRK,RKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.538
|
0.254
|
0.037
|
0.360
|
0.086
|
0.058
|
0.072
|
0.047
|
0.074
|
0.225
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004072
|
2.000
|
1.000
|
Hsc_gene_8779.t1
|
Hsc_gene_8779.t1
|
— | — |
KAI1728345.1 putative DNA helicase Ino80 [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.917|GO:0009987_0.867|GO:0065007_0.805|GO:0008152_0.803|GO:0050789_0.800|GO:0044238_0.789|GO:0050794_0.781|GO:0043170_0.778|GO:0006139_0.762|GO:0090304_0.741|GO:0019222_0.740|GO:0080090_0.729|GO:0060255_0.728|GO:0032502_0.727|GO:0019219_0.704|GO:0050793_0.687|GO:0005575_0.681|GO:0110165_0.675|GO:0005622_0.668|GO:0043226_0.617|GO:0043229_0.604|GO:0016020_0.577|GO:0003674_0.571|GO:0043227_0.560|GO:0043231_0.549|GO:0005488_0.537|GO:0044237_0.503|GO:0009058_0.501
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28;174-189
|
1.000
|
29-173
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
21914.790
|
9.210
|
4.500
|
36.508
|
8.995
|
57.672
|
42.328
|
20.106
|
16.402
|
41.270
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
134.743
|
84.334
|
138.859
|
155.510
|
182.149
|
195.392
|
210.070
|
150.621
|
92.892
|
100.981
|
97.514
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.488
|
0.745
|
0.273
|
— | — | — |
-0.484
|
0.626
|
— | — | — | — | — |
No JSON data available for plots.