Hg_chrom5_TN10mRNA_9643
Organism: Heterodera glycines Gene Locus: chr5:3993892-3994818 Feature type: polypeptideProtein Sequence
Length: 136
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.94 | 1.197 | 0.802 | 0.254 | 1.593 | 2.074 | 0.613 | 1.103 | 0.817 | 1.49 | 0.891 | 3.028 | 0.613 | 0.707 | 1.351 | 0.84 | 0.844 | 0.668 | 0.0 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9072
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.852
|
0.233
|
0.013
|
0.365
|
0.067
|
0.109
|
0.108
|
0.013
|
0.147
|
0.171
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002200
|
3.000
|
1.000
|
Hsc_gene_20089.t1
|
Hsc_gene_20089.t1
|
— |
Q6DJ25.1 Mediator of RNA polymerase II transcription subunit 10 [Xenopus tropicalis]
|
KAI1718389.1 transcription factor subunit med10 of mediator complex domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003712|GO:0006357|GO:0016592
|
GO:0005575_0.833|GO:0110165_0.830|GO:0005622_0.780|GO:0016020_0.745|GO:0043226_0.729|GO:0043229_0.702|GO:0008150_0.681|GO:0043227_0.661|GO:0043231_0.646|GO:0032991_0.640|GO:0005634_0.606|GO:0009987_0.533|GO:0065007_0.529|GO:0050789_0.517|GO:0050794_0.501
|
IPR019145+2-103+
|
— |
PF09748+2-103+Transcription_factor_subunit_Med10_of_Mediator_complex
|
— |
PTHR13345+3-108+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
100-136
|
1.000
|
1-99
|
8trh_J
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.502
|
15482.600
|
6.240
|
-0.500
|
28.676
|
7.353
|
52.941
|
47.059
|
14.706
|
13.971
|
42.647
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
16.041
|
8.560
|
10.983
|
13.379
|
12.327
|
12.285
|
7.411
|
5.947
|
23.789
|
25.754
|
24.912
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
-1.155
|
— | — | — | — | — | — |
No JSON data available for plots.