Hg_chrom5_TN10mRNA_9644
Organism: Heterodera glycines Gene Locus: chr5:3995041-3995889 Feature type: polypeptideProtein Sequence
Length: 176
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.595 | 1.189 | 0.517 | 0.588 | 1.136 | 0.874 | 0.744 | 1.989 | 1.894 | 0.614 | 1.119 | 1.003 | 1.42 | 1.42 | 1.971 | 0.731 | 0.745 | 0.775 | 2.622 | 0.668 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9073
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
PGRKRKV
|
— | — |
3-25
|
0.998
|
— | — |
0.000
|
— | — |
0.070
|
0.975
|
0.003
|
0.114
|
0.012
|
0.007
|
0.013
|
0.004
|
0.081
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004074
|
2.000
|
1.000
|
Hsc_gene_20090.t1
|
Hsc_gene_20090.t1
|
— |
P45965.1 Uncharacterized protein T09A5.5 [Caenorhabditis elegans]
|
KAH7727170.1 Protein T09A5.5 [Aphelenchus avenae]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.868|GO:0110165_0.862|GO:0005622_0.827|GO:0043226_0.783|GO:0043229_0.778|GO:0016020_0.769|GO:0005737_0.765|GO:0043227_0.743|GO:0043231_0.743|GO:0005739_0.581
|
IPR036249+30-108+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-176
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
20634.770
|
10.679
|
16.500
|
30.682
|
14.773
|
48.864
|
51.136
|
21.023
|
9.659
|
43.182
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.853
|
0.906
|
0.790
|
0.927
|
1.397
|
0.988
|
2.127
|
1.800
|
0.509
|
0.000
|
0.218
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.