SCN Proteipedia

Hg_chrom5_TN10mRNA_9645

Organism: Heterodera glycines Gene Locus: chr5:3996602-4003624 Feature type: polypeptide

Protein Sequence

Length: 1,171

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.172	0.596	0.606	0.412	0.911	1.007	1.017	0.769	1.252	1.408	0.569	2.261	1.566	0.69	1.464	1.196	0.812	1.074	0.591	0.628	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9074	—	—	1.667	1.000	2.000	1.000	2.000	2.000	2.000	1.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_described	0.995

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane\|lysosome_vacuole	—	KKRP	—	—	—	—	—	—	0.000	—	—	0.122	0.132	0.018	0.139	0.378	0.677	0.494	0.061	0.786	0.069

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004075	1.000	2.000	Hsc_gene_20091.t1;Hsc_gene_20091.t2	Hsc_gene_20091.t1;Hsc_gene_20091.t2	—	P34713.2 Multidrug resistance protein pgp-3 [Caenorhabditis elegans]	KAI1718391.1 ABC transporter transmembrane region domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0016020\|GO:0016887\|GO:0055085\|GO:0140359	GO:0005575_0.896\|GO:0110165_0.890\|GO:0008150_0.807\|GO:0016020_0.795\|GO:0071944_0.768\|GO:0005886_0.754\|GO:0009987_0.578\|GO:0051179_0.538\|GO:0006810_0.531\|GO:0051234_0.531	IPR003439+387-623_405-554_1071-1137+\|IPR003593+414-600_1080-1161+\|IPR011527+54-337_54-352_721-992_722-1019+\|IPR017871+526-540+\|IPR027417+379-625_385-658_1045-1149_1046-1139+\|IPR036640+39-368_109-1028_710-1024+\|IPR039421+33-622+	SM00382+414-600_1080-1161+	PF00005+405-554_1071-1137+ABC_transporter\|PF00664+54-337_721-992+ABC_transporter_transmembrane_region	G3DSA:3.40.50.300:FF:000916+378-630+ABC_transporter_B_family_member_9	PTHR24221+33-622+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-28;611-662;1136-1171	2.000	29-610;663-1135	7ndf_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.833	128202.650	9.717	34.000	21.264	10.077	41.076	58.924	12.468	8.796	49.701

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	1709.269	628.742	4849.437	1963.601	923.208	609.301	2614.471	1566.154	3161.338	173.955	1454.262

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.719	1.505	-1.196	-1.120	-0.586	2.111	1.267	0.877	4.042	—	—	—	—

No JSON data available for plots.

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