Hg_chrom5_TN10mRNA_9646
Organism: Heterodera glycines Gene Locus: chr5:4004004-4006449 Feature type: polypeptideProtein Sequence
Length: 554
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.986 | 0.965 | 1.083 | 0.934 | 0.872 | 1.574 | 0.688 | 1.173 | 1.203 | 1.22 | 1.149 | 0.956 | 1.254 | 0.764 | 1.51 | 0.851 | 1.332 | 0.602 | 0.694 | 0.212 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9075
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRNLAKKIADVIDRDRSR,RRQLEQQAKDQPTPSTRRK
|
11-31
|
0.930
|
— | — | — | — |
0.000
|
— | — |
0.857
|
0.112
|
0.022
|
0.282
|
0.122
|
0.027
|
0.041
|
0.011
|
0.101
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000079
|
6.000
|
11.000
|
Hsc_gene_11676.t1;Hsc_gene_24520.t1;Hsc_gene_24520.t2;Hsc_gene_24523.t1;Hsc_gene_24523.t2;Hsc_gene_3438.t1;Hsc_gene_5165.t1;Hsc_gene_5520.t1;Hsc_gene_5520.t2;Hsc_gene_5521.t1;Hsc_gene_5521.t2
|
Hsc_gene_1724.t1;Hsc_gene_19189.t2;Hsc_gene_24520.t1;Hsc_gene_3438.t1;Hsc_gene_5165.t1;Hsc_gene_5521.t1;Hsc_gene_761.t1
|
— | — | — |
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009689+232-395+
|
— |
PF06918+232-395+Protein_of_unknown_function_(DUF1280)
|
— |
PTHR31424+93-504+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-195
|
1.000
|
196-554
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
62061.870
|
9.841
|
27.500
|
28.520
|
8.484
|
52.888
|
47.112
|
17.329
|
11.191
|
49.097
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
16.674
|
7.599
|
15.631
|
21.169
|
15.579
|
8.628
|
10.865
|
29.561
|
32.213
|
7.899
|
18.320
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.341
|
— | — | — | — |
1.681
|
-1.303
|
— | — | — | — | — |
No JSON data available for plots.