Hg_chrom5_TN10mRNA_9648
Organism: Heterodera glycines Gene Locus: chr5:4020686-4022195 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.77 | 0.924 | 0.783 | 0.343 | 1.38 | 0.849 | 0.67 | 0.828 | 1.03 | 1.298 | 0.803 | 2.727 | 0.92 | 1.019 | 1.081 | 1.135 | 1.031 | 1.254 | 0.764 | 1.071 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9077
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.451
|
0.101
|
0.008
|
0.531
|
0.115
|
0.171
|
0.166
|
0.013
|
0.028
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009369
|
1.000
|
1.000
|
Hsc_gene_20095.t1
|
Hsc_gene_20095.t1
|
— |
Q18967.1 Eukaryotic translation initiation factor 3 subunit F [Caenorhabditis elegans]
|
KAH7727139.1 Mov34/MPN/PAD-1 family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0008233|GO:0008237
|
GO:0008150_0.860|GO:0009987_0.711|GO:0005575_0.700|GO:0110165_0.696|GO:0005622_0.596|GO:0008152_0.596|GO:0044238_0.568|GO:0005737_0.540|GO:0043170_0.536|GO:0044237_0.530|GO:0019538_0.529|GO:0009058_0.516
|
IPR000555+3-123_6-163+|IPR024969+189-299+|IPR037518+7-164+
|
SM00232+6-163+
|
PF01398+3-123+JAB1/Mov34/MPN/PAD-1_ubiquitin_protease|PF13012+189-299+Maintenance_of_mitochondrial_structure_and_function
|
— |
PTHR10540+3-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-302
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
33899.920
|
5.455
|
-3.500
|
24.834
|
9.603
|
46.358
|
53.642
|
12.252
|
12.583
|
49.338
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkturquoise
|
2355.804
|
1655.926
|
1871.746
|
2581.718
|
2762.969
|
2285.068
|
3052.757
|
1960.049
|
3008.372
|
1986.524
|
2424.459
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.503
|
0.573
|
— |
-0.259
|
0.430
|
-0.326
|
0.783
|
— | — | — | — | — |
No JSON data available for plots.