Hg_chrom5_TN10mRNA_9656
Organism: Heterodera glycines Gene Locus: chr5:4044329-4048190 Feature type: polypeptideProtein Sequence
Length: 807
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.778 | 1.297 | 0.969 | 0.598 | 1.322 | 1.303 | 0.472 | 1.425 | 0.771 | 1.457 | 0.826 | 1.312 | 1.859 | 0.81 | 1.239 | 1.027 | 0.813 | 0.601 | 1.906 | 0.984 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9084
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
19-39
|
0.994
|
13-50
|
0.924
|
— | — |
0.000
|
— | — |
0.141
|
0.935
|
0.015
|
0.233
|
0.041
|
0.059
|
0.169
|
0.014
|
0.054
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009375
|
1.000
|
1.000
|
Hsc_gene_20103.t1
|
Hsc_gene_20103.t1
|
— | — |
CDJ81355.1 Peptidase M3A M3B domain containing protein [Haemonchus contortus]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237
|
GO:0008150_0.852|GO:0005575_0.747|GO:0110165_0.745|GO:0009987_0.706|GO:0003674_0.690|GO:0005622_0.612|GO:0008152_0.607|GO:0003824_0.566|GO:0016787_0.506
|
IPR001567+331-790+|IPR024077+265-786+|IPR024079+466-627+|IPR045090+78-795+
|
— |
PF01432+331-790+Peptidase_family_M3
|
— |
PTHR11804+78-795+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
806-807
|
1.000
|
1-805
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
94194.500
|
6.337
|
-2.500
|
27.633
|
15.366
|
50.434
|
49.566
|
14.374
|
13.259
|
43.618
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
2479.231
|
1805.759
|
1747.840
|
2061.840
|
2224.398
|
1862.958
|
1984.074
|
1882.078
|
2324.570
|
4014.852
|
3290.445
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.276
|
— |
0.347
|
— |
-0.241
|
— | — |
0.217
|
— | — | — | — | — |
No JSON data available for plots.