Hg_chrom5_TN10mRNA_9657
Organism: Heterodera glycines Gene Locus: chr5:4048411-4048858 Feature type: polypeptideProtein Sequence
Length: 89
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.392 | 1.568 | 0.613 | 0.387 | 1.124 | 2.017 | 0.535 | 0.562 | 2.996 | 1.367 | 0.851 | 1.983 | 0.624 | 0.648 | 1.376 | 0.803 | 0.553 | 1.021 | 0.864 | 0.991 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9085
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.572
|
0.127
|
0.008
|
0.495
|
0.239
|
0.312
|
0.193
|
0.003
|
0.017
|
0.175
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009376
|
1.000
|
1.000
|
Hsc_gene_20104.t1
|
Hsc_gene_20104.t1
|
— |
Q9VLV5.1 Probable small nuclear ribonucleoprotein E [Drosophila melanogaster]
|
KAH7701406.1 small nuclear ribonucleoprotein E [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398|GO:0003723|GO:0005681
|
GO:0005575_0.923|GO:0110165_0.916|GO:0005622_0.846|GO:0043226_0.800|GO:0043229_0.789|GO:0016020_0.783|GO:0043227_0.717|GO:0043231_0.704|GO:0008150_0.699|GO:0032991_0.639|GO:0009987_0.635|GO:0005634_0.543|GO:0005737_0.531
|
IPR001163+21-87_23-86+|IPR010920+14-87+|IPR027078+5-87_9-87+|IPR047575+16-89+
|
SM00651+21-87+
|
PF01423+23-86+LSM_domain
|
G3DSA:2.30.30.100:FF:000013+1-89+Small_nuclear_ribonucleoprotein_E
|
PTHR11193+5-87+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-89
|
8ro1_l
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
10344.100
|
8.977
|
2.500
|
23.596
|
7.865
|
47.191
|
52.809
|
13.483
|
10.112
|
38.202
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
1038.424
|
600.431
|
815.986
|
1809.351
|
1769.865
|
1280.792
|
842.372
|
909.508
|
813.049
|
922.704
|
875.709
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.211
|
1.454
|
1.259
|
— |
-0.452
|
-0.593
|
-0.600
|
— | — | — | — | — | — |
No JSON data available for plots.