Hg_chrom5_TN10mRNA_9658
Organism: Heterodera glycines Gene Locus: chr5:4049979-4050428 Feature type: polypeptideProtein Sequence
Length: 80
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.872 | 0.872 | 0.455 | 0.0 | 3.75 | 1.282 | 0.744 | 1.25 | 0.0 | 0.169 | 1.326 | 3.676 | 1.042 | 0.721 | 1.531 | 0.893 | 0.41 | 0.568 | 2.885 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9086
|
— | — |
1.889
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.719
|
0.408
|
0.029
|
0.495
|
0.052
|
0.030
|
0.030
|
0.002
|
0.073
|
0.399
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004077
|
2.000
|
1.000
|
Hsc_gene_20088.t1
|
Hsc_gene_20088.t1;Hsc_gene_20105.t1
|
— | — |
KAF7637022.1 HMG box domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.751|GO:0110165_0.740|GO:0008150_0.702|GO:0065007_0.659|GO:0009987_0.651|GO:0050789_0.649|GO:0050794_0.617|GO:0016020_0.601|GO:0003674_0.592|GO:0005488_0.592|GO:0005622_0.588|GO:0043226_0.525|GO:0043229_0.509
|
IPR009071+3-71_4-68_4-70+|IPR031061+2-77+|IPR036910+1-80_4-71+
|
SM00398+3-71+
|
PF00505+4-68+HMG_(high_mobility_group)_box
|
— |
PTHR46261+2-77+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-80
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
9569.460
|
4.568
|
-6.000
|
43.750
|
12.500
|
61.250
|
38.750
|
18.750
|
25.000
|
36.250
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
lightgreen
|
90.666
|
208.859
|
40.045
|
45.202
|
51.482
|
57.426
|
154.641
|
55.969
|
39.249
|
137.118
|
95.174
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.614
|
-2.345
|
— | — | — |
1.442
|
— |
1.613
|
— | — | — | — | — |
No JSON data available for plots.