Hg_chrom5_TN10mRNA_9659
Organism: Heterodera glycines Gene Locus: chr5:4051573-4053859 Feature type: polypeptideProtein Sequence
Length: 403
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.548 | 0.635 | 1.128 | 0.513 | 1.406 | 1.718 | 1.093 | 1.117 | 0.882 | 1.408 | 0.489 | 1.314 | 1.792 | 0.62 | 1.671 | 0.78 | 0.773 | 0.978 | 1.336 | 0.657 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9087
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.555
|
0.496
|
0.169
|
0.551
|
0.143
|
0.098
|
0.183
|
0.326
|
0.037
|
0.102
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004078
|
1.000
|
2.000
|
Hsc_gene_20106.t1;Hsc_gene_20106.t2
|
Hsc_gene_20106.t1;Hsc_gene_20106.t2
|
— |
Q09644.4 Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial [Caenorhabditis elegans]
|
KAH7716578.1 putative S-adenosyl-L-methionine-dependent methyltransferase MidA [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.894|GO:0110165_0.882|GO:0005622_0.812|GO:0016020_0.786|GO:0005737_0.763|GO:0043226_0.743|GO:0043229_0.736|GO:0043227_0.711|GO:0043231_0.696|GO:0008150_0.685|GO:0009987_0.625|GO:0005739_0.561
|
IPR003788+6-343_38-279+|IPR029063+7-340+|IPR038375+1-348+
|
— |
PF02636+38-279+Putative_S-adenosyl-L-methionine-dependent_methyltransferase
|
— |
PTHR12049+6-343+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
398-403
|
1.000
|
1-397
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
46154.130
|
5.125
|
-8.500
|
28.288
|
12.655
|
47.891
|
52.109
|
13.648
|
14.640
|
44.169
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightcyan
|
818.420
|
789.637
|
782.915
|
947.644
|
1091.672
|
918.535
|
1097.462
|
805.761
|
483.884
|
805.065
|
667.416
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.242
|
0.126
|
0.385
|
0.173
|
-0.235
|
0.268
|
-0.294
|
0.589
|
— | — | — | — | — |
No JSON data available for plots.