Hg_chrom5_TN10mRNA_9661
Organism: Heterodera glycines Gene Locus: chr5:4055211-4057550 Feature type: polypeptideProtein Sequence
Length: 492
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.685 | 1.134 | 0.702 | 0.35 | 1.253 | 1.355 | 0.774 | 1.524 | 0.903 | 1.126 | 1.478 | 1.793 | 0.96 | 0.625 | 2.033 | 1.016 | 0.966 | 0.831 | 0.313 | 0.359 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9089
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRFCKRYATNSRLKRI,KRIHHHGHKHGRKRAM,RKGKGEKKRRRRRRRNS,KGGKGERTRAEKKVKKRRKRGRGVRKLLGK
|
27-62
|
0.965
|
— | — | — | — |
0.000
|
— | — |
0.794
|
0.120
|
0.003
|
0.427
|
0.043
|
0.005
|
0.019
|
0.005
|
0.067
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009378
|
1.000
|
1.000
|
Hsc_gene_20108.t1
|
Hsc_gene_20108.t1
|
— | — |
KAI1732962.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.938|GO:0110165_0.938|GO:0005622_0.903|GO:0043226_0.882|GO:0043229_0.872|GO:0003674_0.864|GO:0016020_0.864|GO:0005488_0.842|GO:0043227_0.810|GO:0043231_0.791|GO:0097159_0.784|GO:0043228_0.777|GO:0043232_0.777|GO:0003676_0.774|GO:0003723_0.736|GO:0005634_0.731|GO:0031974_0.665|GO:0031981_0.664|GO:0043233_0.664|GO:0070013_0.664|GO:0005654_0.610|GO:0005730_0.602|GO:0005694_0.569
|
IPR000504+130-222+|IPR012677+123-223+|IPR035979+123-202+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-37;206-263;319-492
|
2.000
|
38-205;264-318
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
56251.490
|
10.960
|
48.500
|
34.146
|
8.130
|
57.317
|
42.683
|
22.764
|
11.382
|
43.902
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
5325.718
|
19227.447
|
3921.234
|
1790.211
|
1846.277
|
1793.580
|
1942.354
|
3375.550
|
4102.973
|
7511.539
|
6050.725
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.526
|
-3.562
|
-1.020
|
— | — | — |
0.807
|
-0.654
|
— | — |
-1.692
|
— | — |
No JSON data available for plots.