Hg_chrom5_TN10mRNA_9662
Organism: Heterodera glycines Gene Locus: chr5:4057589-4058981 Feature type: polypeptideProtein Sequence
Length: 272
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.325 | 0.855 | 0.668 | 0.887 | 0.98 | 0.66 | 0.875 | 0.551 | 0.98 | 1.341 | 0.78 | 2.163 | 1.225 | 0.778 | 1.05 | 1.155 | 0.904 | 1.393 | 0.566 | 0.433 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9090
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKPR,KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.395
|
0.487
|
0.065
|
0.702
|
0.130
|
0.104
|
0.268
|
0.030
|
0.073
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009379
|
1.000
|
1.000
|
Hsc_gene_20109.t1
|
Hsc_gene_20109.t1
|
— |
Q20848.1 Putative pyrroline-5-carboxylate reductase [Caenorhabditis elegans]
|
KAI1732961.1 pyrroline-5-carboxylate reductase dimerization domain-containing protein [Ditylenchus destructor]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004735|GO:0006561
|
GO:0005575_0.849|GO:0110165_0.842|GO:0008150_0.776|GO:0005622_0.668|GO:0005737_0.652|GO:0009987_0.637|GO:0008152_0.541|GO:0044237_0.515|GO:0044238_0.511|GO:0009058_0.510
|
IPR000304+1-267_1-270+|IPR008927+160-269+|IPR028939+1-77+|IPR029036+161-267+|IPR036291+1-159+|IPR053790+223-245+
|
— |
PF03807+1-77+NADP_oxidoreductase_coenzyme_F420-dependent|PF14748+161-267+Pyrroline-5-carboxylate_reductase_dimerisation
|
G3DSA:1.10.3730.10:FF:000001+164-270+Pyrroline-5-carboxylate_reductase
|
PTHR11645+1-267+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
268-272
|
1.000
|
1-267
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
29226.930
|
7.887
|
3.500
|
20.956
|
7.721
|
40.809
|
59.191
|
11.397
|
9.559
|
55.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
2239.898
|
6783.874
|
1931.397
|
1041.970
|
1275.815
|
1125.851
|
1153.935
|
1659.967
|
1293.894
|
3214.331
|
2391.286
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.044
|
-2.840
|
-0.780
|
0.260
|
-0.165
|
— |
0.457
|
-0.382
|
— | — | — | — | — |
No JSON data available for plots.