Hg_chrom5_TN10mRNA_9665
Organism: Heterodera glycines Gene Locus: chr5:4062660-4064319 Feature type: polypeptideProtein Sequence
Length: 260
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.626 | 0.805 | 0.699 | 0.928 | 1.154 | 0.69 | 1.19 | 1.731 | 1.538 | 1.299 | 0.641 | 1.357 | 2.35 | 0.74 | 1.57 | 0.659 | 0.757 | 1.049 | 0.888 | 0.339 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9093
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.736
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
11-31
|
0.999
|
— | — | — | — |
0.027
|
— | — |
0.280
|
0.765
|
0.092
|
0.419
|
0.100
|
0.058
|
0.105
|
0.067
|
0.046
|
0.296
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009382
|
1.000
|
1.000
|
Hsc_gene_20112.t1
|
Hsc_gene_20112.t1
|
— |
Q29R99.1 Octanoyl-[acyl-carrier-protein]:protein N-octanoyltransferase LIPT2, mitochondrial [Danio rerio]
|
KAI1726550.1 biotin/lipoate a/B protein ligase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009249|GO:0033819|GO:0036211
|
GO:0005575_0.805|GO:0110165_0.798|GO:0003674_0.667|GO:0005622_0.646|GO:0008150_0.646|GO:0005737_0.643|GO:0016020_0.638|GO:0003824_0.593|GO:0009987_0.570|GO:0043226_0.526|GO:0008152_0.521|GO:0043229_0.507
|
IPR000544+11-243_12-233_20-230_50-212+|IPR004143+29-226_44-234+|IPR020605+88-103+|IPR045864+14-231_15-232+
|
— |
PF21948+29-226+Lipoyl_protein_ligase_A/B_catalytic_domain
|
— |
PTHR10993+21-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-260
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
29338.000
|
8.187
|
7.500
|
26.154
|
14.231
|
41.538
|
58.462
|
15.385
|
10.769
|
45.385
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
731.047
|
956.003
|
580.384
|
542.344
|
570.215
|
449.531
|
696.067
|
694.047
|
590.534
|
1072.207
|
865.775
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.950
|
-0.955
|
— | — |
-0.329
|
0.642
|
0.521
|
— | — | — | — | — | — |
No JSON data available for plots.