Hg_chrom5_TN10mRNA_9667
Organism: Heterodera glycines Gene Locus: chr5:4066123-4070083 Feature type: polypeptideProtein Sequence
Length: 730
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.717 | 1.083 | 1.121 | 1.181 | 0.89 | 1.335 | 0.881 | 1.507 | 1.157 | 1.222 | 1.162 | 1.37 | 1.75 | 0.869 | 1.006 | 0.881 | 0.719 | 0.768 | 0.632 | 0.645 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9095
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
GIRRRRGAIKHA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.412
|
0.186
|
0.015
|
0.653
|
0.118
|
0.361
|
0.239
|
0.014
|
0.413
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009384
|
1.000
|
1.000
|
Hsc_gene_20114.t1
|
Hsc_gene_20114.t1
|
— |
P34722.2 Protein kinase C-like 1 [Caenorhabditis elegans]
|
KAF7640424.1 Protein kinase C [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004674|GO:0004697|GO:0005524|GO:0006468
|
GO:0008150_0.965|GO:0065007_0.915|GO:0009987_0.907|GO:0003674_0.899|GO:0003824_0.899|GO:0016740_0.899|GO:0140096_0.896|GO:0004672_0.894|GO:0016301_0.894|GO:0016772_0.894|GO:0016773_0.894|GO:0050789_0.889|GO:0050794_0.877|GO:0004674_0.862|GO:0005575_0.825|GO:0110165_0.825|GO:0050896_0.822|GO:0005622_0.782|GO:0023052_0.759|GO:0051716_0.757|GO:0007154_0.755|GO:0007165_0.747|GO:0048518_0.747|GO:0032501_0.726|GO:0048522_0.687|GO:0032502_0.653|GO:0048856_0.642|GO:0008152_0.622|GO:0016043_0.610|GO:0071840_0.610|GO:0016020_0.607|GO:0005488_0.587|GO:0048583_0.587|GO:0019538_0.580|GO:0043170_0.580|GO:0044238_0.580|GO:0071944_0.580|GO:0005737_0.574|GO:0006793_0.572|GO:0006796_0.572|GO:0044237_0.572|GO:0023051_0.568|GO:0010646_0.563|GO:0036211_0.557|GO:0043412_0.557|GO:0005886_0.551|GO:0016310_0.546|GO:0048519_0.537|GO:0006468_0.526|GO:0035556_0.506|GO:0005515_0.504|GO:0032879_0.504|GO:0051179_0.504|GO:0019222_0.502
|
IPR000719+388-647_389-636+|IPR000961+648-712_648-720+|IPR002219+186-236_187-236_187-237_258-308_259-308_259-310+|IPR008271+508-520+|IPR011009+382-691+|IPR014376+21-719+|IPR017441+394-417+|IPR017892+668-710+|IPR020454+184-198_200-209_213-224_297-309+|IPR035892+20-150_45-139+|IPR046349+164-239_246-313+|IPR050236+159-714+
|
SM00109+187-236_259-308+|SM00133+648-712+|SM00220+388-647+
|
PF00069+389-636+Protein_kinase_domain|PF00130+187-237_259-310+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)|PF00433+668-710+Protein_kinase_C_terminal_domain|PF21494+26-134+Protein_kinase_C_delta/epsilon/eta/theta,_C2_domain
|
G3DSA:1.10.510.10:FF:001541+472-678+Protein_kinase_C|G3DSA:3.30.200.20:FF:000103+379-495+Protein_kinase_C|G3DSA:3.30.60.20:FF:000003+255-320+Protein_kinase_C_delta|G3DSA:3.30.60.20:FF:000008+171-240+Protein_kinase_C_theta
|
PTHR24356+159-714+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-10
|
1.000
|
11-730
|
1xjd_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
82180.140
|
8.125
|
19.000
|
27.123
|
12.329
|
47.534
|
52.466
|
15.616
|
11.507
|
47.945
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
2227.108
|
2689.125
|
4781.227
|
2259.385
|
1486.126
|
1709.879
|
1328.460
|
6003.263
|
444.004
|
1814.044
|
1226.884
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
-0.389
|
-0.974
|
-0.636
|
0.217
|
-0.355
|
1.712
|
-2.037
|
— | — | — | — | — |
No JSON data available for plots.