Hg_chrom5_TN10mRNA_9669
Organism: Heterodera glycines Gene Locus: chr5:4083907-4086066 Feature type: polypeptideProtein Sequence
Length: 272
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.069 | 1.111 | 0.735 | 3.803 | 0.735 | 0.848 | 1.007 | 1.287 | 0.98 | 1.143 | 0.39 | 0.433 | 1.94 | 0.919 | 0.75 | 1.681 | 0.362 | 0.724 | 0.283 | 0.433 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9097
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
extracellular
|
chloroplast
|
— | — | — |
25-62
|
0.956
|
1-24
|
0.947
|
0.999
|
1.000
|
1.000
|
0.192
|
0.127
|
0.008
|
0.292
|
0.343
|
0.384
|
0.249
|
0.013
|
0.155
|
0.799
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_20116.t1;Hsc_gene_20116.t2
|
— |
O77469.3 Fibulin-1 [Caenorhabditis elegans]
|
KAF7640427.1 Fibulin-1 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005576
|
GO:0005575_0.871|GO:0110165_0.849|GO:0008150_0.832|GO:0009987_0.748|GO:0071944_0.689|GO:0003674_0.678|GO:0065007_0.606|GO:0050789_0.597|GO:0016020_0.514|GO:0005488_0.511
|
IPR000020+105-137+|IPR000152+228-239+|IPR000742+172-208_209-249_212-253+|IPR001881+170-208_209-253+|IPR018097+209-237+|IPR026823+189-212+|IPR052080+172-252+
|
SM00179+170-208_209-253+|SM00181+172-208_212-253+
|
PF12662+189-212+Complement_Clr-like_EGF-like
|
G3DSA:2.10.25.10:FF:000038+204-252+Fibrillin_2
|
PTHR47333+172-252+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-272
|
3v65_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
28874.920
|
5.840
|
-2.500
|
17.279
|
11.397
|
39.338
|
60.662
|
8.824
|
8.456
|
61.029
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
tan
|
233.227
|
157.408
|
560.314
|
133.530
|
75.757
|
144.267
|
192.138
|
354.637
|
508.191
|
32.457
|
236.343
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.602
|
-0.374
|
-1.960
|
-0.849
|
0.944
|
0.423
|
1.193
|
-0.742
|
3.834
|
— | — | — | — |