Hg_chrom5_TN10mRNA_9670
Organism: Heterodera glycines Gene Locus: chr5:4088048-4091224 Feature type: polypeptideProtein Sequence
Length: 561
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.663 | 1.368 | 1.07 | 3.135 | 1.188 | 1.28 | 0.955 | 1.248 | 1.03 | 0.915 | 0.621 | 1.153 | 1.089 | 0.823 | 1.528 | 0.84 | 0.789 | 0.675 | 0.411 | 0.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9098
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
KRPGFCENLLLERCKKL,SAKRHRRRRRTHRNREERGASGRRN
|
— | — | — | — | — | — |
0.113
|
— | — |
0.382
|
0.246
|
0.004
|
0.123
|
0.086
|
0.016
|
0.061
|
0.033
|
0.190
|
0.849
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004079
|
1.000
|
2.000
|
Hsc_gene_20116.t1;Hsc_gene_20116.t2
|
Hsc_gene_20116.t1;Hsc_gene_20116.t2
|
— |
O77469.3 Fibulin-1 [Caenorhabditis elegans]
|
KAI6229119.1 Fibulin-1 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.848|GO:0110165_0.846|GO:0008150_0.786|GO:0009987_0.705|GO:0003674_0.588|GO:0071944_0.581|GO:0065007_0.560|GO:0050789_0.546
|
IPR000152+175-186_260-271+|IPR000742+6-47_51-109_113-157_158-200_161-200_184-199_201-244_204-244_228-243_245-285_248-285_269-284_289-330_314-329_334-376+|IPR001881+12-47_48-93_110-157_158-200_201-244_245-285_286-330_331-376+|IPR009030+142-287_256-382+|IPR018097+331-356+|IPR026823+311-334+|IPR049883+10-46_48-82_110-156_158-199_201-243_245-284+|IPR050751+9-251+
|
SM00179+12-47_48-93_110-157_158-200_201-244_245-285_286-330_331-376+|SM00181+6-47_51-109_113-157_161-200_204-244_248-285_289-330_334-376+
|
PF07645+10-46_48-82_110-156_158-199_201-243_245-284+Calcium-binding_EGF_domain|PF12662+311-334+Complement_Clr-like_EGF-like|PF22914+396-509+Fibulin_C-terminal_Ig-like_domain
|
G3DSA:2.10.25.10:FF:000005+293-376+Fibrillin_2|G3DSA:2.10.25.10:FF:000038+43-82_199-239+Fibrillin_2|G3DSA:2.10.25.10:FF:000139+159-198+Fibulin-1|G3DSA:2.10.25.10:FF:000240+249-289+Vitamin_K-dependent_protein_S
|
PTHR24034+9-251+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
504-561
|
1.000
|
1-503
|
9nu3_M
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
62552.750
|
6.362
|
-1.000
|
27.094
|
8.913
|
48.663
|
51.337
|
14.082
|
13.012
|
54.011
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
818.692
|
421.704
|
2343.465
|
672.819
|
334.781
|
554.433
|
811.783
|
1744.780
|
1136.566
|
147.941
|
571.637
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.246
|
0.537
|
-1.693
|
-1.039
|
0.742
|
0.561
|
1.551
|
-0.962
|
2.827
|
— | — | — | — |
No JSON data available for plots.