Hg_chrom5_TN10mRNA_9671
Organism: Heterodera glycines Gene Locus: chr5:4091276-4091841 Feature type: polypeptideProtein Sequence
Length: 131
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.799 | 1.953 | 0.555 | 1.316 | 0.891 | 1.174 | 0.364 | 2.29 | 2.205 | 1.341 | 0.578 | 0.449 | 1.484 | 0.294 | 1.246 | 1.527 | 0.751 | 0.925 | 0.0 | 0.449 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9099
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.798
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
43-74
|
0.943
|
— | — | — | — |
0.000
|
— | — |
0.322
|
0.510
|
0.051
|
0.483
|
0.068
|
0.029
|
0.034
|
0.176
|
0.094
|
0.228
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
O77469.3 Fibulin-1 [Caenorhabditis elegans]
|
XP_003139677.1 fibulin-1 [Loa loa];EFO24395.1 fibulin-1 [Loa loa]
|
No
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.912|GO:0005575_0.905|GO:0110165_0.895|GO:0009987_0.859|GO:0065007_0.805|GO:0050789_0.795|GO:0003674_0.789|GO:0048518_0.722|GO:0071840_0.721|GO:0051179_0.720|GO:0016043_0.717|GO:0051641_0.698|GO:0033036_0.685|GO:0070727_0.684|GO:0008104_0.683|GO:0040011_0.674|GO:0045229_0.674|GO:0030198_0.670|GO:0040012_0.670|GO:0040017_0.670|GO:0043062_0.670|GO:0071944_0.658|GO:0005198_0.655|GO:0005201_0.650|GO:0030312_0.650|GO:0031012_0.650|GO:0005604_0.540|GO:0062023_0.540
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-131
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
14745.880
|
8.066
|
5.000
|
22.901
|
11.450
|
51.145
|
48.855
|
14.504
|
8.397
|
48.092
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
63.394
|
71.572
|
144.004
|
63.592
|
26.102
|
41.754
|
66.002
|
162.444
|
62.658
|
14.554
|
35.170
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
— |
-1.071
|
-1.315
|
0.691
|
0.669
|
1.856
|
-1.158
|
— | — | — | — | — |
No JSON data available for plots.