Hg_chrom5_TN10mRNA_9672
Organism: Heterodera glycines Gene Locus: chr5:4092986-4097762 Feature type: polypeptideProtein Sequence
Length: 961
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.944 | 1.162 | 0.719 | 0.215 | 1.544 | 1.574 | 0.818 | 0.989 | 1.064 | 1.125 | 0.725 | 0.979 | 0.867 | 0.78 | 2.166 | 1.353 | 0.836 | 0.725 | 0.16 | 0.337 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9100
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRRK,KRRRRR,RRQEEQLRQRRTELTERRR
|
— | — |
50-72
|
0.986
|
— | — |
0.000
|
— | — |
0.370
|
0.102
|
0.027
|
0.561
|
0.049
|
0.095
|
0.138
|
0.048
|
0.242
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009386
|
1.000
|
1.000
|
Hsc_gene_20117.t1
|
Hsc_gene_20117.t1
|
— |
O15066.1 Kinesin-like protein KIF3B [Homo sapiens]
|
KAI1726451.1 kinesin motor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003777|GO:0005524|GO:0007018|GO:0008017
|
GO:0005575_0.936|GO:0110165_0.932|GO:0005622_0.874|GO:0043226_0.772|GO:0008150_0.759|GO:0016020_0.730|GO:0009987_0.722|GO:0043229_0.710|GO:0005737_0.668|GO:0003674_0.658|GO:0043228_0.626|GO:0043232_0.626|GO:0071944_0.610|GO:0071840_0.601|GO:0005886_0.593|GO:0016043_0.592|GO:0043227_0.575|GO:0032991_0.565|GO:0005856_0.525|GO:0005488_0.506
|
IPR001752+58-396_60-388_66-388_134-155_254-271_288-306_338-359+|IPR019821+287-298+|IPR027417+61-422+|IPR027640+55-617+|IPR036961+60-407+
|
SM00129+58-396+
|
PF00225+66-388+Kinesin_motor_domain
|
G3DSA:3.40.850.10:FF:000029+59-407+Kinesin-like_protein_KIF17
|
PTHR47969+55-617+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-71;376-579;645-734;817-961
|
3.000
|
72-375;580-644;735-816
|
3b6u_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.885
|
107446.320
|
10.126
|
30.500
|
30.593
|
6.452
|
56.296
|
43.704
|
17.378
|
13.215
|
47.971
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
2451.426
|
7871.653
|
4592.237
|
2399.935
|
1010.626
|
1320.508
|
1278.308
|
3955.583
|
2422.956
|
496.952
|
1322.382
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.007
|
-1.851
|
-0.828
|
-1.279
|
0.399
|
— |
1.483
|
-1.489
|
— | — |
2.574
|
— | — |
No JSON data available for plots.