Hg_chrom5_TN10mRNA_9674
Organism: Heterodera glycines Gene Locus: chr5:4099911-4104871 Feature type: polypeptideProtein Sequence
Length: 519
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.963 | 0.986 | 0.771 | 0.465 | 1.317 | 1.334 | 0.826 | 1.445 | 1.028 | 0.989 | 1.022 | 0.907 | 1.017 | 1.334 | 1.101 | 1.569 | 0.695 | 0.876 | 0.296 | 0.397 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9102
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.505
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
QRMKGRKRDPRKEGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.438
|
0.107
|
0.024
|
0.684
|
0.167
|
0.076
|
0.153
|
0.054
|
0.427
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009387
|
1.000
|
1.000
|
Hsc_gene_20118.t1
|
Hsc_gene_20118.t1
|
— |
G5EDM4.1 Na(+)/H(+) exchange regulatory cofactor-like protein nrfl-1 [Caenorhabditis elegans]
|
KAI1726448.1 PDZ domain (Also known as DHR or GLGF) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.859|GO:0110165_0.853|GO:0016020_0.734|GO:0003674_0.715|GO:0008150_0.690|GO:0005488_0.680|GO:0005622_0.677|GO:0005515_0.631|GO:0043226_0.622|GO:0009987_0.608|GO:0043229_0.596|GO:0071944_0.555|GO:0065007_0.549|GO:0005886_0.538|GO:0050789_0.505
|
IPR001478+7-87_9-90_13-85_19-90_215-296_218-293_224-296+|IPR036034+5-93_7-96_199-293_209-300+|IPR041489+240-291+|IPR051067+7-515+
|
SM00228+19-90_224-296+
|
PF00595+13-85+PDZ_domain|PF17820+240-291+PDZ_domain
|
— |
PTHR14191+7-515+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
108-168;322-519
|
2.000
|
1-107;169-321
|
2m0u_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.875
|
56596.590
|
7.544
|
7.500
|
27.168
|
8.285
|
51.830
|
48.170
|
15.029
|
12.139
|
52.987
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1494.961
|
1302.022
|
2209.607
|
1261.856
|
1280.164
|
2088.997
|
2548.663
|
2005.873
|
1336.840
|
776.382
|
1016.579
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
-0.182
|
-0.699
|
— |
0.720
|
0.298
|
— |
0.488
|
— | — | — | — | — |
No JSON data available for plots.