SCN Proteipedia

Hg_chrom5_TN10mRNA_9675

Organism: Heterodera glycines Gene Locus: chr5:4107197-4109549 Feature type: polypeptide

Protein Sequence

Length: 501

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.766	1.114	0.944	0.895	0.965	1.126	0.689	1.497	0.976	1.78	0.817	1.057	1.941	0.537	1.344	1.34	0.753	0.635	1.075	0.352	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9103	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.971

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RRGGKAIWTTETIGRWIRR	11-32	0.996	—	—	—	—	0.000	—	—	0.554	0.287	0.028	0.496	0.193	0.103	0.140	0.033	0.232	0.168

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009388	1.000	1.000	Hsc_gene_20120.t1	Hsc_gene_20120.t1	—	—	KAI1732898.1 NB-ARC domain-containing protein [Ditylenchus destructor]	No	-0.170

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.942\|GO:0005575_0.919\|GO:0110165_0.914\|GO:0009987_0.894\|GO:0005622_0.854\|GO:0003674_0.847\|GO:0065007_0.845\|GO:0016020_0.840\|GO:0050789_0.828\|GO:0050794_0.806\|GO:0043226_0.805\|GO:0043229_0.802\|GO:0050896_0.787\|GO:0005488_0.776\|GO:0008152_0.771\|GO:0044238_0.770\|GO:0009058_0.767\|GO:0043170_0.767\|GO:0005737_0.766\|GO:0044237_0.762\|GO:0032501_0.760\|GO:0071840_0.754\|GO:0044249_0.749\|GO:0043227_0.747\|GO:0009059_0.744\|GO:0032502_0.743\|GO:0048856_0.743\|GO:0016043_0.742\|GO:0043231_0.740\|GO:0048518_0.736\|GO:0010467_0.735\|GO:0048519_0.732\|GO:0005515_0.730\|GO:0019222_0.729\|GO:0007275_0.725\|GO:0048522_0.725\|GO:0031323_0.724\|GO:0019538_0.720\|GO:0006950_0.717\|GO:0048523_0.716\|GO:0060255_0.715\|GO:0080090_0.713\|GO:0009889_0.706\|GO:0031326_0.705\|GO:0003824_0.704\|GO:0006996_0.703\|GO:0010556_0.702\|GO:0065008_0.702\|GO:0010468_0.701\|GO:0009893_0.699\|GO:0010604_0.694\|GO:0044085_0.694\|GO:0097159_0.694\|GO:0031325_0.691\|GO:0009891_0.690\|GO:0009605_0.689\|GO:0031328_0.689\|GO:0044419_0.689\|GO:0009653_0.688\|GO:0051128_0.688\|GO:0008219_0.686\|GO:0009607_0.686\|GO:0010557_0.686\|GO:0012501_0.686\|GO:0022607_0.686\|GO:0043207_0.686\|GO:0050793_0.686\|GO:0051707_0.686\|GO:0042592_0.684\|GO:0051246_0.684\|GO:0006915_0.683\|GO:0030030_0.683\|GO:0043067_0.683\|GO:0065009_0.683\|GO:0120036_0.683\|GO:0006952_0.682\|GO:0042981_0.682\|GO:0007010_0.681\|GO:0043933_0.681\|GO:0007155_0.680\|GO:0009790_0.680\|GO:0010628_0.680\|GO:0043066_0.680\|GO:0043069_0.680\|GO:0050790_0.680\|GO:0098542_0.680\|GO:0006508_0.679\|GO:0051094_0.678\|GO:0051130_0.678\|GO:0009617_0.677\|GO:0019725_0.677\|GO:0030029_0.676\|GO:0051604_0.676\|GO:0009792_0.675\|GO:0016787_0.675\|GO:0030031_0.675\|GO:0030036_0.675\|GO:0030155_0.675\|GO:0034330_0.675\|GO:0090066_0.675\|GO:0120031_0.675\|GO:0031647_0.674\|GO:0042742_0.674\|GO:0043085_0.674\|GO:0044093_0.674\|GO:0051247_0.674\|GO:0051336_0.674\|GO:0097435_0.674\|GO:0019899_0.673\|GO:0032535_0.673\|GO:0043068_0.673\|GO:0050808_0.673\|GO:0140096_0.673\|GO:0036094_0.671\|GO:0004175_0.670\|GO:0004197_0.670\|GO:0006919_0.670\|GO:0007015_0.670\|GO:0008154_0.670\|GO:0008233_0.670\|GO:0008234_0.670\|GO:0008361_0.670\|GO:0010950_0.670\|GO:0010952_0.670\|GO:0010954_0.670\|GO:0016485_0.670\|GO:0022411_0.670\|GO:0030042_0.670\|GO:0030162_0.670\|GO:0031638_0.670\|GO:0032060_0.670\|GO:0032984_0.670\|GO:0040034_0.670\|GO:0043065_0.670\|GO:0043280_0.670\|GO:0043281_0.670\|GO:0045862_0.670\|GO:0046716_0.670\|GO:0048598_0.670\|GO:0050803_0.670\|GO:0050807_0.670\|GO:0050829_0.670\|GO:0051261_0.670\|GO:0051345_0.670\|GO:0052547_0.670\|GO:0052548_0.670\|GO:0070613_0.670\|GO:0097153_0.670\|GO:0097194_0.670\|GO:0097202_0.670\|GO:0098883_0.670\|GO:0150146_0.670\|GO:1900117_0.670\|GO:1900118_0.670\|GO:1902742_0.670\|GO:1903317_0.670\|GO:1903319_0.670\|GO:1904747_0.670\|GO:1904748_0.670\|GO:1905806_0.670\|GO:1905808_0.670\|GO:2000116_0.670\|GO:2001056_0.670\|GO:0043167_0.669\|GO:0098772_0.669\|GO:0043169_0.664\|GO:0042802_0.663\|GO:0030234_0.661\|GO:0140677_0.661\|GO:0043168_0.659\|GO:0046872_0.659\|GO:0000166_0.656\|GO:1901265_0.656\|GO:1901363_0.656\|GO:0008047_0.654\|GO:0017076_0.654\|GO:0019904_0.654\|GO:0030554_0.654\|GO:0097367_0.654\|GO:0032991_0.652\|GO:0000287_0.650\|GO:0002020_0.650\|GO:0005524_0.650\|GO:0008656_0.650\|GO:0016504_0.650\|GO:0016505_0.650\|GO:0032553_0.650\|GO:0032555_0.650\|GO:0032559_0.650\|GO:0035639_0.650\|GO:0043028_0.650\|GO:0051400_0.650\|GO:0051432_0.650\|GO:0051434_0.650\|GO:0061133_0.650\|GO:0061134_0.650\|GO:0061135_0.650\|GO:0070513_0.650\|GO:0089720_0.650\|GO:0005634_0.637\|GO:0005829_0.598\|GO:1902494_0.566\|GO:0005739_0.555\|GO:0048471_0.545\|GO:0008303_0.540\|GO:1905368_0.540\|GO:1905369_0.540	IPR027417+4-200_18-293+\|IPR036388+284-470+	—	—	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	438-501	1.000	1-437	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.770	56756.950	8.197	12.500	25.948	12.575	49.102	50.898	14.970	10.978	45.908

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	midnightblue	1628.425	3779.249	1833.234	1655.119	1514.225	1393.167	2058.723	1881.011	754.172	1265.705	1046.476

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.274	-1.328	—	-0.160	—	0.575	0.328	0.274	—	—	—	—	—

No JSON data available for plots.

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