Hg_chrom5_TN10mRNA_9677
Organism: Heterodera glycines Gene Locus: chr5:4111190-4115541 Feature type: polypeptideProtein Sequence
Length: 910
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.099 | 1.176 | 0.699 | 0.872 | 1.227 | 1.409 | 0.615 | 1.099 | 0.806 | 1.247 | 0.849 | 0.905 | 1.007 | 0.676 | 1.615 | 1.429 | 1.009 | 0.882 | 0.845 | 0.226 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9105
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RDKKRQR,AKRGKPSSVKKGR,KRACGQIGRTTKNRRT,KRGQSEASADQQKKDWRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.303
|
0.159
|
0.020
|
0.595
|
0.145
|
0.317
|
0.249
|
0.077
|
0.357
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009390
|
1.000
|
1.000
|
Hsc_gene_20122.t1
|
Hsc_gene_20122.t1
|
— |
A1L3T7.1 RIPOR family member 3 [Mus musculus]
|
KAI1732986.1 filopodia upregulated, FAM65 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.853|GO:0110165_0.847|GO:0008150_0.788|GO:0005622_0.771|GO:0009987_0.745|GO:0065007_0.627|GO:0016020_0.610|GO:0050789_0.610|GO:0050794_0.595|GO:0005737_0.568|GO:0043226_0.561|GO:0043229_0.547|GO:0032502_0.537|GO:0048856_0.536|GO:0071944_0.533|GO:0005886_0.520
|
IPR016024+814-895+|IPR026136+1-899+|IPR031780+1-138+
|
— |
PF15903+1-138+Filopodia_upregulated,_FAM65
|
— |
PTHR15829+1-899+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
138-427;475-548;907-910
|
3.000
|
1-137;428-474;549-906
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.856
|
100929.080
|
9.102
|
31.000
|
26.923
|
7.692
|
53.626
|
46.374
|
15.714
|
11.209
|
51.538
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2165.674
|
1729.656
|
2011.840
|
1808.080
|
1709.840
|
2578.129
|
2957.055
|
5806.191
|
1204.640
|
1596.049
|
1428.302
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.113
|
0.607
|
0.208
|
1.076
|
-0.835
|
— | — | — | — | — |
No JSON data available for plots.