Hg_chrom5_TN10mRNA_9678
Organism: Heterodera glycines Gene Locus: chr5:4122078-4123004 Feature type: polypeptideProtein Sequence
Length: 127
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.641 | 1.099 | 1.432 | 0.272 | 1.312 | 0.808 | 0.281 | 1.181 | 1.4 | 1.596 | 0.954 | 2.779 | 1.75 | 0.757 | 1.125 | 0.9 | 0.904 | 1.193 | 0.0 | 0.232 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9106
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.829
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.266
|
0.216
|
0.026
|
0.661
|
0.058
|
0.035
|
0.122
|
0.014
|
0.063
|
0.270
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004080
|
2.000
|
1.000
|
Hsc_gene_18247.t1
|
Hsc_gene_18247.t1
|
— |
Q9FF15.2 Formin-like protein 16 [Arabidopsis thaliana]
|
KAI1721523.1 formin homology 2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.360
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007010|GO:0022604
|
GO:0008150_0.912|GO:0009987_0.861|GO:0003674_0.805|GO:0005488_0.763|GO:0005515_0.750|GO:0071840_0.741|GO:0016043_0.733|GO:0032501_0.721|GO:0032502_0.710|GO:0048856_0.708|GO:0007275_0.698|GO:0048869_0.694|GO:0005575_0.605|GO:0110165_0.591|GO:0005622_0.561|GO:0005737_0.524|GO:0043226_0.514
|
IPR015425+1-127_37-122+|IPR042201+30-124+|IPR043592+37-123+
|
— |
PF02181+37-122+Formin_Homology_2_Domain
|
— |
PTHR45857+37-123+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-127
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
14570.860
|
4.953
|
-3.500
|
29.921
|
9.449
|
49.606
|
50.394
|
14.173
|
15.748
|
44.882
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
256.341
|
368.328
|
501.286
|
316.266
|
258.674
|
229.507
|
176.250
|
259.638
|
88.222
|
264.094
|
188.720
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.214
|
-0.357
|
-0.555
|
-0.321
|
— |
-0.369
|
— |
-0.416
|
— | — | — | — | — |
No JSON data available for plots.