Hg_chrom5_TN10mRNA_9679
Organism: Heterodera glycines Gene Locus: chr5:4143053-4144915 Feature type: polypeptideProtein Sequence
Length: 319
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.547 | 1.312 | 1.254 | 0.649 | 1.202 | 0.804 | 0.485 | 2.038 | 1.742 | 1.313 | 0.95 | 1.844 | 1.742 | 0.603 | 1.152 | 0.851 | 0.719 | 1.092 | 0.482 | 0.645 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9107
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.289
|
0.618
|
0.017
|
0.575
|
0.031
|
0.091
|
0.050
|
0.100
|
0.206
|
0.190
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009391
|
1.000
|
1.000
|
Hsc_gene_20123.t1
|
Hsc_gene_20123.t1
|
— |
Q09315.2 Putative cytosolic 5'-nucleotidase 3 [Caenorhabditis elegans]
|
KAI1708284.1 pyrimidine 5'-nucleotidase (UMPH-1) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000287|GO:0005737|GO:0008253
|
GO:0008150_0.945|GO:0003674_0.871|GO:0005575_0.859|GO:0110165_0.857|GO:0005622_0.837|GO:0005737_0.799|GO:0003824_0.795|GO:0009987_0.708|GO:0016787_0.695|GO:0008152_0.673|GO:0016788_0.670|GO:0016791_0.655|GO:0042578_0.655|GO:0008252_0.650|GO:0008253_0.650|GO:0044238_0.645|GO:0044237_0.637|GO:0006139_0.558|GO:0009056_0.537|GO:0016020_0.531|GO:0034655_0.505
|
IPR006434+27-316_31-313_63-313+|IPR023214+34-310+|IPR036412+30-313+
|
— |
PF05822+63-313+Pyrimidine_5'-nucleotidase_(UMPH-1)
|
G3DSA:1.10.150.340:FF:000001+70-153+Cytosolic_5-nucleotidase_3-like
|
PTHR13045+24-314+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-319
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.584
|
36867.390
|
6.438
|
-0.500
|
30.094
|
13.166
|
49.216
|
50.784
|
15.987
|
14.107
|
43.887
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
1326.728
|
754.783
|
1180.129
|
1429.497
|
1690.567
|
1612.951
|
963.507
|
1317.686
|
868.480
|
1797.155
|
1399.151
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.415
|
0.784
|
0.385
|
0.210
|
— |
-0.737
|
-0.396
|
-0.313
|
— | — | — | — | — |
No JSON data available for plots.