Hg_chrom5_TN10mRNA_9680
Organism: Heterodera glycines Gene Locus: chr5:4145067-4149312 Feature type: polypeptideProtein Sequence
Length: 774
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.871 | 1.172 | 0.822 | 0.802 | 1.227 | 0.961 | 0.523 | 1.873 | 1.493 | 1.414 | 0.724 | 0.988 | 1.579 | 0.82 | 1.503 | 1.163 | 0.572 | 0.979 | 0.596 | 0.456 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9108
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
FKRR,KRRP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.243
|
0.623
|
0.073
|
0.316
|
0.149
|
0.064
|
0.079
|
0.291
|
0.117
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009392
|
1.000
|
1.000
|
Hsc_gene_20125.t1
|
Hsc_gene_20124.t1;Hsc_gene_20125.t1
|
— |
A8WQQ5.1 Putative exosome complex component RRP41 [Caenorhabditis briggsae]
|
KAH7725413.1 EXOSome component family member [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.831|GO:0005575_0.761|GO:0110165_0.760|GO:0005622_0.712|GO:0005737_0.646|GO:0009987_0.644|GO:0016020_0.635|GO:0008152_0.632|GO:0044238_0.620|GO:0043170_0.597|GO:0043226_0.590|GO:0043229_0.583|GO:0043227_0.563|GO:0006139_0.559|GO:0090304_0.541|GO:0043231_0.535|GO:0044237_0.520|GO:0009058_0.511
|
IPR001247+18-148+|IPR020568+4-147+|IPR027408+1-240+|IPR036345+148-232+|IPR050080+10-228+
|
— |
PF01138+18-148+3'_exoribonuclease_family,_domain_1
|
G3DSA:3.30.230.70:FF:000004+1-238+Exosome_complex_component_Rrp41
|
PTHR11953+10-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
772-774
|
1.000
|
1-771
|
9g8p_L
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
87796.700
|
7.762
|
16.500
|
27.778
|
11.757
|
48.191
|
51.809
|
15.891
|
11.886
|
46.124
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
3616.608
|
2212.865
|
2201.999
|
2188.345
|
2683.579
|
2542.062
|
2722.391
|
2240.885
|
2678.815
|
7516.501
|
5443.207
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.237
|
-0.153
|
0.100
|
0.262
|
— | — |
-0.286
|
0.422
|
-1.579
|
— | — | — | — |
No JSON data available for plots.