SCN Proteipedia

Hg_chrom5_TN10mRNA_9681

Organism: Heterodera glycines Gene Locus: chr5:4150614-4153455 Feature type: polypeptide

Protein Sequence

Length: 528

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.683	1.365	1.033	0.588	1.231	1.845	0.406	1.326	0.631	0.819	0.66	2.117	1.052	1.493	1.585	1.813	0.652	0.545	0.728	0.836	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9109	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.750

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRQKRSAKR,RRQMYEQYGGQKQMRR	—	—	—	—	—	—	0.000	—	—	0.899	0.115	0.006	0.388	0.030	0.045	0.045	0.014	0.047	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004081	1.000	2.000	Hsc_gene_20126.t1;Hsc_gene_20126.t2	Hsc_gene_20126.t1;Hsc_gene_20126.t2	—	A2BGM5.1 Forkhead box protein N4 [Danio rerio]	KAF7638582.1 Fork-head domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355\|GO:0043565	GO:0008150_0.897\|GO:0009987_0.804\|GO:0065007_0.752\|GO:0050789_0.746\|GO:0050794_0.746\|GO:0005575_0.703\|GO:0110165_0.701\|GO:0003674_0.671\|GO:0005488_0.671\|GO:0005622_0.668\|GO:0008152_0.640\|GO:0019222_0.640\|GO:0032502_0.636\|GO:0031323_0.634\|GO:0044237_0.634\|GO:0043170_0.631\|GO:0060255_0.631\|GO:0044238_0.630\|GO:0080090_0.630\|GO:0009058_0.616\|GO:0009059_0.616\|GO:0044249_0.616\|GO:0009889_0.614\|GO:0031326_0.612\|GO:0010467_0.611\|GO:0010468_0.611\|GO:0010556_0.611\|GO:0006139_0.608\|GO:0016070_0.608\|GO:0032774_0.608\|GO:0034654_0.608\|GO:0043226_0.608\|GO:0090304_0.608\|GO:0141187_0.608\|GO:0019219_0.595\|GO:0043229_0.590\|GO:0051252_0.590\|GO:0006351_0.585\|GO:0006355_0.583\|GO:2001141_0.583\|GO:0048856_0.582\|GO:0003676_0.579\|GO:0032501_0.579\|GO:0097159_0.579\|GO:0007275_0.555\|GO:0016020_0.535\|GO:0003677_0.532\|GO:0048518_0.504	IPR001766+286-379_288-301_288-372_288-385_309-326_332-349+\|IPR030456+332-338+\|IPR036388+287-389+\|IPR036390+287-382+\|IPR049624+59-513+	SM00339+286-379+	PF00250+288-372+Forkhead_domain	—	PTHR46721+59-513+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	115-281;378-528	2.000	1-114;282-377	6el8_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.851	60298.800	6.732	2.000	27.841	10.227	57.576	42.424	14.773	13.068	50.568

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	purple	513.977	452.034	265.242	608.098	886.656	730.193	1417.852	399.688	107.072	383.432	264.992

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.000	0.291	1.306	0.512	-0.265	0.968	-0.982	1.972	—	—	—	—	—

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