Hg_chrom5_TN10mRNA_9682
Organism: Heterodera glycines Gene Locus: chr5:4153910-4155611 Feature type: polypeptideProtein Sequence
Length: 356
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.947 | 1.307 | 0.511 | 1.647 | 0.328 | 0.576 | 0.535 | 0.421 | 1.186 | 1.594 | 0.383 | 0.991 | 2.653 | 1.296 | 1.261 | 1.284 | 0.783 | 1.064 | 1.513 | 0.744 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9110
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKQTPENKPKESFLKAKRR
|
104-125
|
0.995
|
3-52
|
0.932
|
— | — |
0.000
|
— | — |
0.069
|
0.091
|
0.008
|
0.114
|
0.108
|
0.198
|
0.121
|
0.010
|
0.830
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009393
|
1.000
|
1.000
|
Hsc_gene_20127.t1
|
Hsc_gene_20127.t1
|
— |
P30975.2 Tachykinin-like peptides receptor 99D [Drosophila melanogaster]
|
KAI6221184.1 G-PROTEIN-RECEP-F1-2 domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.911|GO:0009987_0.832|GO:0050896_0.794|GO:0065007_0.791|GO:0005575_0.787|GO:0110165_0.787|GO:0050789_0.771|GO:0003674_0.734|GO:0007154_0.721|GO:0023052_0.720|GO:0071944_0.713|GO:0050794_0.711|GO:0051716_0.706|GO:0060089_0.702|GO:0005886_0.700|GO:0016020_0.700|GO:0038023_0.699|GO:0007165_0.675|GO:0007186_0.648|GO:0004888_0.633|GO:0005488_0.583|GO:0004930_0.547
|
IPR000276+80-104_96-301_114-135_159-181_165-181_197-218_256-279+|IPR017452+95-303+
|
— |
PF00001+96-301+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24238+77-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-356
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.889
|
39888.790
|
8.925
|
15.500
|
14.326
|
14.888
|
35.955
|
64.045
|
9.551
|
4.775
|
53.371
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
606.607
|
73.960
|
77.830
|
60.408
|
54.098
|
1540.425
|
2504.200
|
92.404
|
38.842
|
973.526
|
572.947
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.429
|
— | — |
4.845
|
0.711
|
-4.176
|
4.907
|
-4.764
|
— | — | — | — |
No JSON data available for plots.