SCN Proteipedia

Hg_chrom5_TN10mRNA_9684

Organism: Heterodera glycines Gene Locus: chr5:4155861-4159988 Feature type: polypeptide

Protein Sequence

Length: 813

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.987	1.173	0.805	0.212	2.091	2.05	0.674	0.923	0.601	1.812	0.95	1.302	0.888	0.497	1.607	0.949	0.706	0.522	0.0	0.217	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9112	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.971

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.351	0.166	0.008	0.603	0.101	0.284	0.414	0.040	0.199	0.035

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009394	1.000	1.000	Hsc_gene_20128.t1	Hsc_gene_20128.t1	—	V6CJ04.1 Protein bicaudal D homolog [Caenorhabditis elegans]	KAI1726389.1 microtubule-associated protein bicaudal-D domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0008093\|GO:0070840	GO:0008150_0.958\|GO:0009987_0.928\|GO:0005575_0.877\|GO:0110165_0.877\|GO:0016043_0.839\|GO:0071840_0.839\|GO:0065007_0.830\|GO:0050789_0.818\|GO:0050794_0.802\|GO:0016020_0.725\|GO:0005622_0.670\|GO:0071944_0.647\|GO:0005886_0.640\|GO:0003674_0.592\|GO:0005488_0.592\|GO:0005515_0.567\|GO:0043226_0.563\|GO:0006996_0.560\|GO:0032502_0.550\|GO:0051128_0.547\|GO:0048856_0.546\|GO:0005737_0.543\|GO:0043229_0.535\|GO:0007010_0.532\|GO:0007017_0.521\|GO:0000226_0.501	IPR018477+7-418_78-273_590-735+	—	PF09730+78-273_590-735+Microtubule-associated_protein_Bicaudal-D	—	PTHR31233+7-418+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-23;429-509;665-813	2.000	24-428;510-664	4bl6_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.587	92019.310	5.225	-15.500	32.964	5.781	56.950	43.050	15.990	16.974	41.205

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1351.364	4593.940	1733.707	1130.999	1008.128	1570.566	1242.206	2167.225	991.215	126.269	496.960

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.635	-2.159	-0.508	-0.197	0.654	-0.328	0.361	-0.661	—	—	—	—	—

No JSON data available for plots.

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