Hg_chrom5_TN10mRNA_9685
Organism: Heterodera glycines Gene Locus: chr5:4161560-4170451 Feature type: polypeptideProtein Sequence
Length: 1,471
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.107 | 0.806 | 0.68 | 0.563 | 1.178 | 1.935 | 0.72 | 1.632 | 0.695 | 1.13 | 0.371 | 1.52 | 0.982 | 1.124 | 1.318 | 1.787 | 0.936 | 0.845 | 0.628 | 0.22 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9113
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PFKKRRR,RKRRESVPRQQKKKKGS,KQRKRRESVPRQQKKKK,RKAKAAETETKTEPFKKRR,KKRRRFQEVETAATKRKDF
|
— | — |
30-53
|
0.986
|
— | — |
0.000
|
— | — |
0.879
|
0.107
|
0.019
|
0.251
|
0.055
|
0.052
|
0.089
|
0.056
|
0.050
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002201
|
1.000
|
3.000
|
Hsc_gene_20130.t1;Hsc_gene_20130.t2;Hsc_gene_20130.t3
|
Hsc_gene_20130.t1;Hsc_gene_20130.t2;Hsc_gene_20130.t3
|
— | — |
KAI1726385.1 hAT family dimerization domain containing protein [Ditylenchus destructor]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
— |
IPR003656+595-656+|IPR012337+956-1413+|IPR052717+594-1414+
|
— | — | — |
PTHR46169+594-1414+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
41-441;522-591;638-844;1208-1299;1442-1471
|
5.000
|
1-40;442-521;592-637;845-1207;1300-1441
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
160144.600
|
6.372
|
-4.000
|
22.978
|
8.362
|
52.209
|
47.791
|
12.169
|
10.809
|
54.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
2893.365
|
1165.469
|
6512.823
|
4512.095
|
2818.930
|
2297.507
|
2665.672
|
7714.839
|
2331.701
|
526.946
|
1300.412
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.254
|
1.815
|
-0.422
|
-0.711
|
-0.281
|
0.224
|
1.648
|
-1.394
|
2.038
|
— |
2.620
|
— | — |
No JSON data available for plots.