SCN Proteipedia

Hg_chrom5_TN10mRNA_9686

Organism: Heterodera glycines Gene Locus: chr5:4176626-4179605 Feature type: polypeptide

Protein Sequence

Length: 681

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.888	0.888	0.641	1.114	1.052	1.167	0.892	1.395	0.718	1.29	0.578	1.123	1.591	1.101	1.379	1.51	0.746	0.912	0.791	0.518	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9114	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-Not_Clustered	0.848

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KVKK	—	—	7-40	0.992	—	—	0.000	—	—	0.151	0.068	0.027	0.178	0.407	0.426	0.299	0.043	0.654	0.101

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009395	1.000	1.000	Hsc_gene_20131.t1	Hsc_gene_20131.t1	—	Q09488.1 Serine/threonine-protein kinase receptor sma-6 [Caenorhabditis elegans]	KAI6214169.1 Receptor protein serine/threonine kinase [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004675\|GO:0005524\|GO:0006468\|GO:0007178\|GO:0016020	GO:0008150_0.943\|GO:0065007_0.879\|GO:0009987_0.878\|GO:0050789_0.869\|GO:0050794_0.847\|GO:0050896_0.832\|GO:0032501_0.796\|GO:0005575_0.779\|GO:0110165_0.779\|GO:0007154_0.773\|GO:0023052_0.766\|GO:0003674_0.755\|GO:0051716_0.747\|GO:0032502_0.741\|GO:0048856_0.738\|GO:0007165_0.726\|GO:0007275_0.700\|GO:0016020_0.664\|GO:0005488_0.641\|GO:0007166_0.632\|GO:0048518_0.621\|GO:0071944_0.603\|GO:0048522_0.596\|GO:0005886_0.592\|GO:0007167_0.563\|GO:0008152_0.563\|GO:0048731_0.563\|GO:0005515_0.562\|GO:0030154_0.555\|GO:0048869_0.555\|GO:0048513_0.552\|GO:0007178_0.551\|GO:0043170_0.551\|GO:0003824_0.541\|GO:0140096_0.541\|GO:0044237_0.533\|GO:0016740_0.519\|GO:0019222_0.512\|GO:0060089_0.510\|GO:0044238_0.509\|GO:0141091_0.504	IPR000333+114-137_398-419_590-671+\|IPR000719+257-609_257-659_264-468+\|IPR008271+385-397+\|IPR011009+255-475+\|IPR045860+49-149+	SM00220+257-659+	PF00069+264-468+Protein_kinase_domain	—	PTHR23255+590-671+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	525-681	1.000	1-524	3mdy_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.874	75076.230	7.946	14.500	23.201	11.307	46.696	53.304	13.363	9.838	52.570

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	1235.258	168.174	505.866	598.717	1516.873	1853.952	5545.401	1404.928	66.274	1006.833	603.736

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.360	1.694	0.352	1.309	0.304	1.592	-0.507	2.125	-4.058	—	—	—	—

No JSON data available for plots.

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