Hg_chrom5_TN10mRNA_9687
Organism: Heterodera glycines Gene Locus: chr5:4180734-4181540 Feature type: polypeptideProtein Sequence
Length: 94
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.866 | 0.99 | 1.161 | 1.101 | 0.887 | 1.091 | 0.76 | 3.191 | 0.946 | 1.006 | 0.484 | 3.129 | 0.591 | 1.227 | 1.303 | 0.912 | 1.395 | 0.322 | 1.637 | 0.626 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9115
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.851
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.333
|
0.189
|
0.068
|
0.488
|
0.153
|
0.200
|
0.108
|
0.029
|
0.113
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009396
|
1.000
|
1.000
|
Hsc_gene_20132.t1
|
Hsc_gene_20132.t1
|
B0495.6
|
Q9VHI4.1 Splicing factor 3B subunit 5 [Drosophila melanogaster]
|
KAH7697541.1 splicing factor 3B subunit 5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398
|
GO:0005575_0.889|GO:0110165_0.878|GO:0005622_0.797|GO:0016020_0.751|GO:0008150_0.743|GO:0043226_0.723|GO:0043229_0.714|GO:0043227_0.682|GO:0009987_0.673|GO:0043231_0.673|GO:0032991_0.639|GO:0005634_0.610|GO:0008152_0.561|GO:0043170_0.561|GO:0009058_0.553|GO:0009059_0.553|GO:0010467_0.553|GO:0044237_0.553|GO:0044249_0.553|GO:0140513_0.550|GO:1990904_0.547|GO:0030532_0.545|GO:0120114_0.545|GO:0005686_0.540|GO:0097525_0.540
|
IPR009846+10-86_10-88+|IPR017089+6-92+
|
— |
PF07189+10-86+Splicing_factor_3B_subunit_10_(SF3b10)
|
— |
PTHR20978+10-88+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;88-94
|
1.000
|
23-87
|
9k1y_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
10622.960
|
6.743
|
1.000
|
27.660
|
12.766
|
51.064
|
48.936
|
15.957
|
11.702
|
51.064
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
945.928
|
643.014
|
716.216
|
1001.645
|
978.798
|
785.994
|
1122.606
|
775.785
|
993.495
|
1134.291
|
1073.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.502
|
0.594
|
— |
-0.301
|
0.526
|
— |
0.677
|
— | — | — | — | — |
No JSON data available for plots.