Hg_chrom5_TN10mRNA_9688
Organism: Heterodera glycines Gene Locus: chr5:4181542-4183187 Feature type: polypeptideProtein Sequence
Length: 367
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.729 | 1.838 | 0.892 | 0.94 | 0.545 | 1.258 | 0.779 | 1.226 | 1.393 | 1.252 | 0.784 | 0.801 | 1.665 | 0.891 | 1.057 | 0.895 | 0.893 | 0.908 | 1.258 | 1.122 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9116
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.481
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
28-59
|
0.942
|
— | — | — | — |
0.000
|
— | — |
0.068
|
0.038
|
0.025
|
0.175
|
0.525
|
0.455
|
0.433
|
0.004
|
0.639
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009397
|
1.000
|
1.000
|
Hsc_gene_20133.t1
|
Hsc_gene_20133.t1
|
— |
H2L0H3.1 CDC50 family protein chat-1 [Caenorhabditis elegans]
|
KAH7725409.1 Protein CHAT-1 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.791|GO:0110165_0.786|GO:0008150_0.727|GO:0016020_0.716|GO:0005622_0.655|GO:0009987_0.611|GO:0043226_0.589|GO:0005737_0.571|GO:0043229_0.555|GO:0043227_0.553|GO:0043231_0.551|GO:0071944_0.545|GO:0051179_0.527|GO:0065007_0.527|GO:0005886_0.517|GO:0051234_0.503
|
IPR005045+2-363_21-356_66-348+
|
— |
PF03381+66-348+LEM3_(ligand-effect_modulator_3)_family_/_CDC50_family
|
— |
PTHR10926+21-356+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
364-367
|
1.000
|
1-363
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.883
|
41529.420
|
8.741
|
12.500
|
20.981
|
13.896
|
45.504
|
54.496
|
12.807
|
8.174
|
50.681
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
1148.773
|
1406.136
|
1059.008
|
1033.600
|
1083.761
|
1290.775
|
1207.558
|
1423.020
|
1013.232
|
1077.012
|
1049.678
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.638
|
-0.581
|
— | — |
0.267
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.