SCN Proteipedia

Hg_chrom5_TN10mRNA_9691

Organism: Heterodera glycines Gene Locus: chr5:4190060-4196139 Feature type: polypeptide

Protein Sequence

Length: 1,454

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.152	1.567	0.713	0.759	1.204	1.164	0.655	1.444	0.871	1.264	1.125	1.052	0.459	0.794	0.8	1.356	1.139	1.011	0.37	0.384	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9119	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.988

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	PKPS,KKRSKERQKEKKRAKKQAKK	—	—	—	—	—	—	0.000	—	—	0.338	0.188	0.008	0.700	0.157	0.194	0.278	0.042	0.201	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009400	1.000	1.000	Hsc_gene_20136.t1	Hsc_gene_20136.t1;Hsc_gene_20136.t2;Hsc_gene_20136.t3	—	O75179.3 Ankyrin repeat domain-containing protein 17 [Homo sapiens]	KAH7729304.1 ankyrin repeat and KH domain-containing protein mask [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0005515	GO:0008150_0.800\|GO:0005575_0.787\|GO:0110165_0.783\|GO:0009987_0.719\|GO:0005622_0.713\|GO:0016020_0.654\|GO:0065007_0.650\|GO:0003674_0.638\|GO:0050789_0.619\|GO:0050794_0.600\|GO:0043226_0.596\|GO:0043229_0.567\|GO:0005488_0.562\|GO:0043227_0.532\|GO:0032501_0.507	IPR002110+10-75_11-40_11-43_44-74_78-107_78-110_85-135_114-143_149-178_149-181_154-246_182-211_182-214_215-244_215-247_248-301_249-278_249-281_279-308_315-344_318-377_348-377_348-380_517-584_521-550_521-553_554-583_554-586_555-570_587-651_588-617_588-620_621-650_621-653_637-651_656-685_656-688_661-752_690-719_690-722_723-752_723-755_758-787_758-790_763-847_791-820_791-823_824-853+\|IPR004087+1108-1180+\|IPR004088+1114-1175+\|IPR036612+1108-1182_1111-1185+\|IPR036770+3-146_14-378_147-317_318-388_490-586_521-847_587-723_724-963+\|IPR047373+1112-1181+\|IPR051631+467-1397+	SM00248+11-40_44-74_78-107_114-143_149-178_182-211_215-244_249-278_279-308_315-344_348-377_521-550_554-583_588-617_621-650_656-685_690-719_723-752_758-787_791-820_824-853+\|SM00322+1108-1180+	PF00013+1114-1175+KH_domain\|PF12796+10-75_154-246_248-301_318-377_517-584_587-651_661-752_763-847+Ankyrin_repeats_(3_copies)\|PF13637+85-135+Ankyrin_repeats_(many_copies)	G3DSA:1.25.40.20:FF:000041+506-653+ankyrin_repeat_and_KH_domain-containing_protein_1_isoform_X1	PTHR23206+467-1397+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-4;429-515;889-1108;1193-1454	3.000	5-428;516-888;1109-1192	6ne4_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.812	157237.470	7.725	24.000	25.378	6.327	53.095	46.905	14.237	11.142	55.502

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	3490.383	5444.048	4611.376	2546.185	2453.625	2340.490	3174.912	2943.739	4846.566	2817.612	3687.164

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.469	-1.234	-0.748	—	—	0.450	0.224	0.253	—	—	—	—	—

No JSON data available for plots.

Back to Browser