Hg_chrom5_TN10mRNA_9692
Organism: Heterodera glycines Gene Locus: chr5:4201891-4205243 Feature type: polypeptideProtein Sequence
Length: 527
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.838 | 0.971 | 0.759 | 0.393 | 1.265 | 0.341 | 0.926 | 1.139 | 1.518 | 0.795 | 1.035 | 1.228 | 1.739 | 0.839 | 1.51 | 1.274 | 1.089 | 0.776 | 1.168 | 0.726 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9120
|
— | — |
1.444
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
nucleus|endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.605
|
0.252
|
0.067
|
0.118
|
0.757
|
0.085
|
0.211
|
0.026
|
0.118
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004082
|
2.000
|
1.000
|
Hsc_gene_20138.t2
|
Hsc_gene_20138.t1
|
— |
Q9Y2U8.2 Inner nuclear membrane protein Man1 [Homo sapiens]
|
KAI1726380.1 LEM domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.945|GO:0005575_0.930|GO:0110165_0.925|GO:0009987_0.901|GO:0016020_0.889|GO:0071944_0.833|GO:0005886_0.811|GO:0005622_0.809|GO:0043226_0.791|GO:0043229_0.771|GO:0005737_0.762|GO:0043227_0.745|GO:0043231_0.736|GO:0005773_0.652|GO:0012505_0.628|GO:0071840_0.583|GO:0016043_0.576|GO:0006996_0.543|GO:0050896_0.528|GO:0007049_0.526|GO:0006997_0.521|GO:0065007_0.513
|
IPR003887+83-127_84-127_86-121+|IPR011015+81-127_82-126+|IPR012677+433-527+|IPR041885+319-407+|IPR052277+83-167+
|
SM00540+84-127+
|
PF03020+86-121+LEM_domain
|
G3DSA:1.10.720.40:FF:000001+78-146+LEM_domain_containing_2,_isoform_CRA_a
|
PTHR13428+83-167+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-179
|
1.000
|
180-527
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.892
|
59166.250
|
9.697
|
19.000
|
28.273
|
12.524
|
49.336
|
50.664
|
16.509
|
11.765
|
49.526
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
641.385
|
785.408
|
664.580
|
521.509
|
451.143
|
440.745
|
907.844
|
947.199
|
550.052
|
624.112
|
592.372
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.471
|
-0.728
|
-0.241
|
-0.241
|
— |
1.054
|
0.998
|
— | — | — | — | — | — |
No JSON data available for plots.