Hg_chrom5_TN10mRNA_9695
Organism: Heterodera glycines Gene Locus: chr5:4215536-4219538 Feature type: polypeptideProtein Sequence
Length: 592
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.825 | 0.904 | 0.737 | 0.233 | 1.098 | 0.303 | 0.965 | 1.182 | 1.426 | 0.867 | 0.998 | 0.994 | 1.642 | 1.007 | 1.551 | 1.472 | 1.218 | 0.717 | 0.91 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9123
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.933
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
nucleus|endoplasmic_reticulum
|
— | — | — | — |
37-65
|
0.987
|
— | — |
0.000
|
— | — |
0.594
|
0.234
|
0.062
|
0.128
|
0.717
|
0.087
|
0.199
|
0.034
|
0.118
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004082
|
2.000
|
1.000
|
Hsc_gene_20138.t2
|
Hsc_gene_20138.t1;Hsc_gene_20138.t2;Hsc_gene_20138.t3
|
— |
Q9Y2U8.2 Inner nuclear membrane protein Man1 [Homo sapiens]
|
KAI1726380.1 LEM domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.951|GO:0005575_0.939|GO:0110165_0.933|GO:0009987_0.910|GO:0016020_0.900|GO:0071944_0.838|GO:0005886_0.816|GO:0005622_0.815|GO:0043226_0.801|GO:0043229_0.780|GO:0005737_0.755|GO:0043227_0.754|GO:0043231_0.743|GO:0005773_0.646|GO:0012505_0.627|GO:0071840_0.540|GO:0016043_0.531|GO:0065007_0.510|GO:0050896_0.506
|
IPR003887+22-66_23-66_25-60+|IPR011015+20-66_21-65+|IPR012677+498-592+|IPR041885+384-472+|IPR052277+22-185+
|
SM00540+23-66+
|
PF03020+25-60+LEM_domain
|
— |
PTHR13428+22-185+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-244
|
1.000
|
245-592
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.928
|
65781.590
|
10.186
|
28.000
|
27.196
|
11.993
|
50.000
|
50.000
|
16.554
|
10.642
|
51.520
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
violet
|
748.947
|
856.840
|
469.198
|
512.569
|
616.758
|
588.120
|
1411.964
|
923.496
|
620.579
|
794.105
|
719.737
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.099
|
-0.878
|
0.237
|
0.235
|
— |
1.276
|
0.545
|
0.757
|
— | — | — | — | — |
No JSON data available for plots.