Hg_chrom5_TN10mRNA_9699
Organism: Heterodera glycines Gene Locus: chr5:4225384-4226653 Feature type: polypeptideProtein Sequence
Length: 226
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 1.132 | 0.965 | 0.458 | 1.991 | 1.929 | 0.474 | 0.442 | 1.278 | 1.495 | 1.475 | 1.562 | 0.983 | 0.425 | 1.716 | 0.695 | 0.29 | 0.737 | 0.34 | 0.521 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9127
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.378
|
0.429
|
0.051
|
0.526
|
0.193
|
0.410
|
0.281
|
0.015
|
0.184
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009403
|
1.000
|
1.000
|
Hsc_gene_20141.t1
|
Hsc_gene_20141.t1
|
— |
Q9U1G5.1 V-type proton ATPase subunit E [Heterodera schachtii]
|
Q9U1G5.1 V-type proton ATPase subunit E [Heterodera schachtii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0033178|GO:0046961|GO:1902600
|
GO:0005575_0.947|GO:0110165_0.945|GO:0005622_0.866|GO:0016020_0.831|GO:0005737_0.761|GO:0043226_0.719|GO:0043229_0.706|GO:0043227_0.650|GO:0043231_0.620|GO:0008150_0.610|GO:0009987_0.571
|
IPR002842+3-222_10-217_18-216+|IPR038495+93-226+
|
— |
PF01991+18-216+ATP_synthase_(E/31_kDa)_subunit
|
G3DSA:3.30.2320.30:FF:000001+93-226+V-type_proton_atpase_subunit_e_1
|
PTHR45715+3-222+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-226
|
9cfc_J
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.527
|
26382.250
|
8.245
|
3.000
|
36.283
|
6.637
|
55.310
|
44.690
|
19.027
|
17.257
|
36.283
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
3834.191
|
1068.108
|
3569.875
|
3960.040
|
5396.708
|
3799.741
|
2991.590
|
4434.910
|
3315.527
|
4830.076
|
4180.984
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.512
|
1.753
|
0.258
|
0.414
|
-0.491
|
-0.334
|
— |
-0.424
|
— | — | — | — | — |
No JSON data available for plots.