SCN Proteipedia

Hg_chrom5_TN10mRNA_9703

Organism: Heterodera glycines Gene Locus: chr5:4231503-4235039 Feature type: polypeptide

Protein Sequence

Length: 640

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.854	1.054	0.881	0.754	0.625	1.162	0.893	1.797	1.007	1.478	0.781	1.011	1.128	1.172	1.084	1.607	0.768	0.639	0.361	0.965	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9130	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|nucleus	—	KRSR,KRGKL	—	—	13-34	0.999	—	—	0.000	—	—	0.681	0.319	0.017	0.498	0.092	0.194	0.114	0.249	0.157	0.110

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009406	1.000	1.000	Hsc_gene_20144.t1	Hsc_gene_20144.t1	—	A8WJR8.2 Dual specificity tyrosine-phosphorylation-regulated kinase mbk-2 [Caenorhabditis briggsae]	KAI1732841.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004712\|GO:0005524\|GO:0006468	GO:0008150_0.876\|GO:0005575_0.848\|GO:0009987_0.839\|GO:0065007_0.805\|GO:0110165_0.805\|GO:0050789_0.797\|GO:0003674_0.750\|GO:0005622_0.745\|GO:0050794_0.737\|GO:0003824_0.683\|GO:0140096_0.683\|GO:0016740_0.658\|GO:0016772_0.613\|GO:0016301_0.596\|GO:0004672_0.595\|GO:0016773_0.595\|GO:0043226_0.580\|GO:0016020_0.573\|GO:0008152_0.566\|GO:0043170_0.566\|GO:0048518_0.565\|GO:0043229_0.562\|GO:0044237_0.548\|GO:0044238_0.543\|GO:0050896_0.534\|GO:0005737_0.509\|GO:0051716_0.509\|GO:0023052_0.502	IPR000719+299-612+\|IPR008271+421-433+\|IPR011009+289-618+\|IPR017441+305-328+\|IPR042521+206-273+\|IPR050494+201-615+	SM00220+299-612+	PF00069+299-612+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000112+380-609+Putative_dual_specificity_tyrosine-phosphorylation-regulated_kinase_2\|G3DSA:3.30.200.20:FF:000127+274-379+Putative_dual_specificity_tyrosine-phosphorylation-regulated_kinase_2	PTHR24058+201-615+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	193-238	2.000	1-192;239-640	7akh_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.938	70151.580	8.848	23.500	22.656	11.406	47.656	52.344	14.062	8.594	52.656

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	1247.585	4092.645	1358.603	1843.811	1639.429	1269.480	1450.132	1646.092	463.412	123.051	268.920

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.820	-1.288	0.549	-0.202	-0.354	0.202	0.268	—	—	—	4.031	—	—

No JSON data available for plots.

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