Hg_chrom5_TN10mRNA_9706
Organism: Heterodera glycines Gene Locus: chr5:4242914-4244199 Feature type: polypeptideProtein Sequence
Length: 241
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.579 | 1.544 | 1.509 | 0.429 | 2.835 | 1.383 | 0.494 | 0.622 | 1.291 | 0.841 | 1.32 | 0.488 | 1.498 | 0.878 | 0.254 | 0.771 | 0.816 | 0.629 | 1.596 | 0.488 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9133
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.843
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PASKRSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.872
|
0.096
|
0.001
|
0.440
|
0.137
|
0.092
|
0.059
|
0.000
|
0.072
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009408
|
1.000
|
1.000
|
Hsc_gene_20146.t1
|
Hsc_gene_20146.t1
|
— |
P53997.2 Protein SET [Drosophila melanogaster]
|
KAI1732848.1 nucleosome assembly protein (NAP) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0006334
|
GO:0005575_0.818|GO:0110165_0.814|GO:0008150_0.812|GO:0005622_0.780|GO:0043226_0.681|GO:0016020_0.665|GO:0043229_0.658|GO:0009987_0.646|GO:0003674_0.623|GO:0043227_0.612|GO:0043231_0.584|GO:0005488_0.564|GO:0005737_0.564|GO:0005634_0.514
|
IPR002164+25-235_76-165+|IPR037231+23-209+
|
— |
PF00956+76-165+Nucleosome_assembly_protein_(NAP)
|
— |
PTHR11875+25-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-38;197-241
|
1.000
|
39-196
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.973
|
27855.370
|
3.942
|
-35.500
|
36.515
|
10.373
|
58.921
|
41.079
|
11.203
|
25.311
|
44.398
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
2180.880
|
1689.769
|
1456.012
|
2765.840
|
2827.874
|
1661.370
|
1613.998
|
1554.490
|
1562.467
|
3280.991
|
2544.481
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.444
|
0.574
|
1.034
|
— |
-0.752
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.