Hg_chrom5_TN10mRNA_9707
Organism: Heterodera glycines Gene Locus: chr5:4244708-4248128 Feature type: polypeptideProtein Sequence
Length: 677
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.635 | 1.202 | 0.967 | 0.815 | 1.329 | 0.985 | 0.475 | 1.773 | 1.149 | 1.018 | 1.365 | 1.216 | 0.944 | 0.994 | 1.266 | 1.477 | 1.017 | 0.649 | 0.568 | 0.652 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9134
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKLNDEEQDNTRQMKKLK,RKLNDEEQDNTRQMKKLKK,RRKRETNKLPKISERFRRF
|
— | — |
20-43
|
0.999
|
— | — |
0.000
|
— | — |
0.928
|
0.044
|
0.015
|
0.247
|
0.050
|
0.023
|
0.038
|
0.015
|
0.040
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009409
|
1.000
|
1.000
|
Hsc_gene_20147.t1
|
Hsc_gene_20147.t1
|
— |
Q6PCB5.2 Lysine-specific demethylase RSBN1L [Homo sapiens]
|
KAI1726373.1 round spermatid basic protein 1-like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634
|
GO:0008150_0.955|GO:0005575_0.933|GO:0110165_0.933|GO:0009987_0.912|GO:0005622_0.901|GO:0003674_0.857|GO:0043226_0.852|GO:0043229_0.844|GO:0016043_0.793|GO:0071840_0.793|GO:0006325_0.691|GO:0003824_0.690|GO:0140096_0.690|GO:0006338_0.689|GO:0140993_0.655|GO:0016491_0.650|GO:0016705_0.650|GO:0016706_0.650|GO:0032451_0.650|GO:0032452_0.650|GO:0035575_0.650|GO:0051213_0.650|GO:0140457_0.650|GO:0141058_0.650|GO:0016020_0.589|GO:0043227_0.521
|
IPR026306+316-675+
|
— | — | — |
PTHR13354+316-675+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-317
|
1.000
|
318-677
|
5uqd_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
76896.880
|
8.816
|
25.000
|
32.053
|
9.897
|
57.607
|
42.393
|
18.759
|
13.294
|
48.301
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1318.004
|
1417.332
|
998.384
|
734.541
|
794.315
|
818.901
|
1606.212
|
1188.713
|
1313.127
|
1947.023
|
1675.353
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.735
|
-1.085
|
-0.334
|
— | — |
0.982
|
0.435
|
0.576
|
— | — | — | — | — |
No JSON data available for plots.