Hg_chrom5_TN10mRNA_9710
Organism: Heterodera glycines Gene Locus: chr5:4251771-4254688 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.715 | 1.21 | 0.774 | 0.245 | 1.261 | 1.334 | 0.901 | 0.827 | 0.841 | 0.958 | 1.039 | 1.252 | 1.248 | 1.409 | 1.544 | 1.621 | 0.853 | 0.681 | 0.364 | 0.278 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9136
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.951
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
LGEV,NRGKGRPRGKRTH,RKGRNSNLDHINSNRGKGR
|
6-27
|
0.954
|
17-56
|
0.964
|
— | — |
0.000
|
— | — |
0.883
|
0.106
|
0.012
|
0.377
|
0.051
|
0.017
|
0.036
|
0.004
|
0.013
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009410
|
1.000
|
1.000
|
Hsc_gene_20149.t1
|
Hsc_gene_20149.t1;Hsc_gene_20149.t2
|
— | — |
KAI1726351.1 RNA polymerase III RPC4 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0005666|GO:0006383
|
— |
IPR007811+5-413_287-411+
|
— |
PF05132+287-411+RNA_polymerase_III_RPC4
|
— |
PTHR13408+5-413+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-186;255-317
|
2.000
|
187-254;318-423
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.970
|
46714.380
|
10.111
|
14.500
|
27.896
|
7.565
|
54.846
|
45.154
|
16.076
|
11.820
|
52.246
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
814.220
|
1174.709
|
706.603
|
829.778
|
1016.916
|
844.445
|
1194.080
|
681.280
|
1233.959
|
218.812
|
653.875
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.965
|
-0.638
|
0.342
|
0.262
|
-0.254
|
0.510
|
-0.411
|
0.951
|
— | — | — | — | — |
No JSON data available for plots.