Hg_chrom5_TN10mRNA_9714
Organism: Heterodera glycines Gene Locus: chr5:4274190-4279472 Feature type: polypeptideProtein Sequence
Length: 1,196
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.603 | 1.128 | 1.049 | 0.288 | 1.686 | 1.651 | 0.518 | 0.962 | 1.059 | 1.006 | 1.292 | 1.23 | 0.906 | 1.029 | 1.382 | 1.278 | 0.822 | 0.823 | 0.579 | 0.639 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9140
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KREREVRDETETREKDR,LEKSKAKFEKEKKERKA,RKSPPRRQESTVSKRERE,KKKRRLEDDVDRYKKKLY
|
— | — |
33-101
|
0.997
|
— | — |
0.000
|
— | — |
0.808
|
0.090
|
0.004
|
0.360
|
0.071
|
0.031
|
0.074
|
0.008
|
0.033
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009412
|
1.000
|
1.000
|
Hsc_gene_20154.t1
|
Hsc_gene_20154.t1
|
— |
Q8CH18.1 Cell division cycle and apoptosis regulator protein 1 [Mus musculus]
|
KAF7640455.1 SAP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006355
|
GO:0008150_0.963|GO:0065007_0.904|GO:0050789_0.897|GO:0003674_0.857|GO:0005488_0.857|GO:0009987_0.821|GO:0050794_0.767|GO:0005515_0.760|GO:0005575_0.713|GO:0110165_0.713|GO:0008152_0.686|GO:0043170_0.686|GO:0005622_0.682|GO:0019222_0.673|GO:0009058_0.671|GO:0009059_0.671|GO:0044237_0.671|GO:0044249_0.671|GO:0010467_0.670|GO:0016020_0.659|GO:0006139_0.658|GO:0031323_0.658|GO:0044238_0.658|GO:0060255_0.654|GO:0090304_0.654|GO:0043226_0.653|GO:0080090_0.652|GO:0034654_0.647|GO:0016070_0.645|GO:0141187_0.643|GO:0043229_0.637|GO:0032774_0.636|GO:0009889_0.635|GO:0031326_0.635|GO:0010556_0.631|GO:0010468_0.629|GO:0048518_0.619|GO:0048522_0.613|GO:0019219_0.612|GO:0051252_0.602|GO:0006351_0.599|GO:0006355_0.592|GO:2001141_0.592|GO:0043227_0.585|GO:0043231_0.538|GO:0005634_0.504
|
IPR003034+629-662_629-663+|IPR025223+90-146+|IPR025224+45-176+|IPR025954+406-530_409-515+|IPR036361+610-676_628-666+|IPR045353+770-835+|IPR045354+298-381+
|
SM00513+629-663+|SM01122+406-530+
|
PF02037+629-662+SAP_domain|PF14443+409-515+DBC1|PF14444+90-146+S1-like|PF19256+770-835+LAIKA_domain|PF19257+298-381+BURAN_domain
|
— |
PTHR14304+45-176+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-31;120-295;517-761;1036-1196
|
3.000
|
32-119;296-516;762-1035
|
8ez6_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
136852.580
|
6.847
|
4.500
|
33.110
|
8.110
|
58.361
|
41.639
|
17.224
|
15.886
|
45.736
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4177.703
|
4763.862
|
3144.044
|
3605.085
|
3918.576
|
3813.708
|
2841.425
|
2754.502
|
3668.798
|
6210.400
|
5121.142
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.829
|
-0.539
|
0.306
|
— | — |
-0.415
|
-0.575
|
0.186
|
— | — | — | — | — |
No JSON data available for plots.