SCN Proteipedia

Hg_chrom5_TN10mRNA_9715

Organism: Heterodera glycines Gene Locus: chr5:4279929-4281802 Feature type: polypeptide

Protein Sequence

Length: 410

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.766	0.851	1.286	0.505	1.911	0.876	0.494	0.732	1.409	1.187	1.367	1.578	0.678	0.704	1.244	0.801	0.84	0.961	0.375	1.22	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9141	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.531

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.901	0.065	0.005	0.314	0.053	0.048	0.072	0.006	0.032	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009413	1.000	1.000	Hsc_gene_20155.t1	Hsc_gene_20155.t1	—	Q5R8H5.1 General transcription factor IIE subunit 1 [Pongo abelii]	KAH7729279.1 TFIIE alpha subunit family protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0006367	GO:0008150_0.944\|GO:0005575_0.916\|GO:0110165_0.912\|GO:0009987_0.894\|GO:0005622_0.881\|GO:0003674_0.863\|GO:0016020_0.838\|GO:0043226_0.834\|GO:0043229_0.811\|GO:0008152_0.792\|GO:0005737_0.791\|GO:0044238_0.790\|GO:0009058_0.777\|GO:0044237_0.777\|GO:0043170_0.776\|GO:0043227_0.767\|GO:0044249_0.758\|GO:0009059_0.754\|GO:0006139_0.752\|GO:0010467_0.752\|GO:0043231_0.741\|GO:0090304_0.733\|GO:0034654_0.731\|GO:0016070_0.722\|GO:0141187_0.721\|GO:0032774_0.714\|GO:0032991_0.713\|GO:0006351_0.695\|GO:0006366_0.685\|GO:0006352_0.679\|GO:0006367_0.678\|GO:0005634_0.675\|GO:0005829_0.653\|GO:0016251_0.650\|GO:0140223_0.650\|GO:0031974_0.616\|GO:0043233_0.616\|GO:0031981_0.615\|GO:0070013_0.615\|GO:1902494_0.592\|GO:0005654_0.585\|GO:0140513_0.579\|GO:0140535_0.567\|GO:0061695_0.560\|GO:1990234_0.560\|GO:0000428_0.550\|GO:0030880_0.550\|GO:0055029_0.549\|GO:0005667_0.547\|GO:0090575_0.545\|GO:0005669_0.540\|GO:0016591_0.540	IPR002853+34-182+\|IPR013083+118-181+\|IPR017919+20-109+\|IPR024550+24-124+\|IPR039997+14-397+	SM00531+34-182+	PF02002+24-124+TFIIE_alpha_subunit	—	PTHR13097+14-397+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	251-371	2.000	1-250;372-410	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.725	47144.610	4.954	-11.000	35.122	8.537	52.927	47.073	16.585	18.537	43.659

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	green	1108.274	599.904	736.787	589.188	595.978	556.351	576.881	803.047	1929.478	1729.788	1815.369

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.163	-0.214	—	—	—	0.425	-0.336	—	-1.557	—	—	—

No JSON data available for plots.

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